Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12115

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
2,751,055	-		HSERO_RS12110	0.43	+0.2
2,751,112	-		HSERO_RS12110	0.49	+1.6
2,751,196	+		HSERO_RS12110	0.57	-0.2
2,751,408	-		HSERO_RS12110	0.79	+0.2
2,751,418	+		HSERO_RS12110	0.80	+0.4
2,751,606	+				+0.7
2,751,663	-				+0.1
2,751,967	-		HSERO_RS12115	0.20	+0.6
2,752,266	+		HSERO_RS12115	0.46	+0.6
2,752,314	-		HSERO_RS12115	0.51	-0.5
2,752,334	-		HSERO_RS12115	0.52	+0.2
2,752,604	-		HSERO_RS12115	0.76	+0.6
2,752,770	+				-0.3
2,752,894	+				+1.2
2,752,923	-				-0.3
2,752,928	-				-0.3
2,753,022	+		HSERO_RS12120	0.19	-0.0
2,753,040	+		HSERO_RS12120	0.21	+0.1
2,753,076	-		HSERO_RS12120	0.25	-0.1
2,753,117	-		HSERO_RS12120	0.30	-0.4
2,753,291	+		HSERO_RS12120	0.52	+1.0
2,753,506	-		HSERO_RS12120	0.79	-0.8
2,753,534	+		HSERO_RS12120	0.83	+0.4
2,753,534	+		HSERO_RS12120	0.83	+0.5
2,753,542	-		HSERO_RS12120	0.84	-0.4
2,753,816	+				-0.2