Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06170

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
1,387,108	-		HSERO_RS06165	0.67	-0.7
1,387,324	-		HSERO_RS06165	0.77	+0.2
1,387,543	+		HSERO_RS06165	0.88	+0.5
1,387,543	+		HSERO_RS06165	0.88	-1.4
1,387,676	-				-2.4
1,387,691	+				+0.1
1,387,872	+				-0.4
1,387,993	+				+0.8
1,388,376	+		HSERO_RS06170	0.36	-1.4
1,388,384	-		HSERO_RS06170	0.37	-0.1
1,389,184	-		HSERO_RS06175	0.11	-0.8
1,389,240	-		HSERO_RS06175	0.16	-0.7
1,389,310	+		HSERO_RS06175	0.22	-3.6
1,389,628	-		HSERO_RS06175	0.50	-3.0
1,389,644	+		HSERO_RS06175	0.52	-0.7
1,389,825	-		HSERO_RS06175	0.68	-1.3