Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02855

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02850 and HSERO_RS02855 are separated by 22 nucleotidesHSERO_RS02855 and HSERO_RS02860 are separated by 83 nucleotides HSERO_RS02850: HSERO_RS02850 - glutamyl-tRNA(Gln) amidotransferase, at 625,155 to 627,110 _RS02850 HSERO_RS02855: HSERO_RS02855 - D-aminoacylase, at 627,133 to 628,629 _RS02855 HSERO_RS02860: HSERO_RS02860 - MFS transporter, at 628,713 to 629,906 _RS02860 Position (kb) 627 628 629Strain fitness (log2 ratio) -2 -1 0 1 2at 626.148 kb on + strand, within HSERO_RS02850at 626.256 kb on + strand, within HSERO_RS02850at 626.258 kb on + strand, within HSERO_RS02850at 626.716 kb on + strand, within HSERO_RS02850at 626.788 kb on + strand, within HSERO_RS02850at 626.829 kb on - strand, within HSERO_RS02850at 626.894 kb on + strand, within HSERO_RS02850at 626.989 kb on - strandat 627.026 kb on - strandat 627.218 kb on - strandat 627.580 kb on + strand, within HSERO_RS02855at 627.622 kb on - strand, within HSERO_RS02855at 627.633 kb on - strand, within HSERO_RS02855at 628.054 kb on - strand, within HSERO_RS02855at 628.126 kb on + strand, within HSERO_RS02855at 628.134 kb on - strand, within HSERO_RS02855at 628.246 kb on + strand, within HSERO_RS02855at 628.473 kb on + strand, within HSERO_RS02855at 628.661 kb on + strandat 628.977 kb on - strand, within HSERO_RS02860at 629.280 kb on - strand, within HSERO_RS02860at 629.322 kb on - strand, within HSERO_RS02860at 629.372 kb on + strand, within HSERO_RS02860at 629.380 kb on - strand, within HSERO_RS02860at 629.427 kb on - strand, within HSERO_RS02860

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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626,148 + HSERO_RS02850 0.51 -0.0
626,256 + HSERO_RS02850 0.56 +0.3
626,258 + HSERO_RS02850 0.56 +0.3
626,716 + HSERO_RS02850 0.80 -0.1
626,788 + HSERO_RS02850 0.83 +0.5
626,829 - HSERO_RS02850 0.86 -1.2
626,894 + HSERO_RS02850 0.89 -0.1
626,989 - -0.6
627,026 - +1.4
627,218 - -0.9
627,580 + HSERO_RS02855 0.30 -0.7
627,622 - HSERO_RS02855 0.33 +0.1
627,633 - HSERO_RS02855 0.33 -1.6
628,054 - HSERO_RS02855 0.62 -2.1
628,126 + HSERO_RS02855 0.66 +0.8
628,134 - HSERO_RS02855 0.67 -0.1
628,246 + HSERO_RS02855 0.74 -1.9
628,473 + HSERO_RS02855 0.90 -0.4
628,661 + -0.8
628,977 - HSERO_RS02860 0.22 +0.4
629,280 - HSERO_RS02860 0.47 -0.7
629,322 - HSERO_RS02860 0.51 +0.1
629,372 + HSERO_RS02860 0.55 +2.1
629,380 - HSERO_RS02860 0.56 +1.4
629,427 - HSERO_RS02860 0.60 +0.8

Or see this region's nucleotide sequence