Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01330 and HSERO_RS01335 are separated by 60 nucleotides HSERO_RS01335 and HSERO_RS01340 are separated by 26 nucleotides
HSERO_RS01330: HSERO_RS01330 - RND transporter, at 284,477 to 285,958
_RS01330
HSERO_RS01335: HSERO_RS01335 - sugar ABC transporter permease, at 286,019 to 286,870
_RS01335
HSERO_RS01340: HSERO_RS01340 - sugar ABC transporter permease, at 286,897 to 287,832
_RS01340
Position (kb) 286
287 Strain fitness (log2 ratio) -2
-1
0
1 at 285.880 kb on + strand at 285.880 kb on + strand at 285.901 kb on - strand at 285.971 kb on + strand at 286.076 kb on + strand at 286.084 kb on - strand at 286.177 kb on - strand, within HSERO_RS01335 at 286.363 kb on - strand, within HSERO_RS01335 at 286.448 kb on - strand, within HSERO_RS01335 at 286.537 kb on + strand, within HSERO_RS01335 at 286.560 kb on - strand, within HSERO_RS01335 at 286.664 kb on + strand, within HSERO_RS01335 at 286.721 kb on - strand, within HSERO_RS01335 at 286.914 kb on + strand at 287.013 kb on + strand, within HSERO_RS01340 at 287.021 kb on - strand, within HSERO_RS01340 at 287.021 kb on - strand, within HSERO_RS01340 at 287.029 kb on + strand, within HSERO_RS01340 at 287.182 kb on - strand, within HSERO_RS01340 at 287.212 kb on - strand, within HSERO_RS01340 at 287.491 kb on + strand, within HSERO_RS01340 at 287.505 kb on - strand, within HSERO_RS01340 at 287.506 kb on - strand, within HSERO_RS01340 at 287.675 kb on + strand at 287.746 kb on + strand at 287.748 kb on + strand at 287.754 kb on - strand at 287.781 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 285,880 + -0.6 285,880 + +0.2 285,901 - -0.3 285,971 + -0.6 286,076 + -0.3 286,084 - +0.2 286,177 - HSERO_RS01335 0.19 +0.1 286,363 - HSERO_RS01335 0.40 -0.1 286,448 - HSERO_RS01335 0.50 +0.8 286,537 + HSERO_RS01335 0.61 -0.1 286,560 - HSERO_RS01335 0.63 +0.8 286,664 + HSERO_RS01335 0.76 +0.3 286,721 - HSERO_RS01335 0.82 +0.6 286,914 + -1.9 287,013 + HSERO_RS01340 0.12 -0.3 287,021 - HSERO_RS01340 0.13 -0.1 287,021 - HSERO_RS01340 0.13 -1.0 287,029 + HSERO_RS01340 0.14 -1.7 287,182 - HSERO_RS01340 0.30 -0.5 287,212 - HSERO_RS01340 0.34 -1.0 287,491 + HSERO_RS01340 0.63 +1.1 287,505 - HSERO_RS01340 0.65 -0.1 287,506 - HSERO_RS01340 0.65 +0.8 287,675 + -1.0 287,746 + +0.5 287,748 + -0.6 287,754 - +0.4 287,781 - +0.7
Or see this region's nucleotide sequence