Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00870 and HSERO_RS00875 are separated by 228 nucleotides HSERO_RS00875 and HSERO_RS00880 are separated by 15 nucleotides
HSERO_RS00870: HSERO_RS00870 - L-proline ABC transporter, substrate-binding component <small>(from data)</small>, at 180,571 to 181,707
_RS00870
HSERO_RS00875: HSERO_RS00875 - hypothetical protein, at 181,936 to 182,946
_RS00875
HSERO_RS00880: HSERO_RS00880 - ornithine cyclodeaminase, at 182,962 to 183,900
_RS00880
Position (kb) 181
182
183 Strain fitness (log2 ratio) -2
-1
0
1
2 at 181.089 kb on - strand, within HSERO_RS00870 at 181.146 kb on + strand, within HSERO_RS00870 at 181.172 kb on - strand, within HSERO_RS00870 at 181.185 kb on + strand, within HSERO_RS00870 at 181.267 kb on + strand, within HSERO_RS00870 at 181.275 kb on - strand, within HSERO_RS00870 at 181.465 kb on + strand, within HSERO_RS00870 at 181.465 kb on + strand, within HSERO_RS00870 at 181.589 kb on - strand, within HSERO_RS00870 at 181.763 kb on + strand at 181.763 kb on + strand at 181.824 kb on + strand at 181.906 kb on + strand at 181.914 kb on - strand at 181.972 kb on - strand at 182.195 kb on - strand, within HSERO_RS00875 at 182.253 kb on + strand, within HSERO_RS00875 at 182.276 kb on - strand, within HSERO_RS00875 at 182.299 kb on - strand, within HSERO_RS00875 at 182.321 kb on + strand, within HSERO_RS00875 at 182.531 kb on - strand, within HSERO_RS00875 at 182.558 kb on + strand, within HSERO_RS00875 at 182.625 kb on - strand, within HSERO_RS00875 at 182.653 kb on - strand, within HSERO_RS00875 at 182.655 kb on + strand, within HSERO_RS00875 at 182.728 kb on + strand, within HSERO_RS00875 at 182.819 kb on + strand, within HSERO_RS00875 at 182.846 kb on - strand at 182.846 kb on - strand at 182.893 kb on - strand at 183.089 kb on - strand, within HSERO_RS00880 at 183.163 kb on + strand, within HSERO_RS00880 at 183.199 kb on + strand, within HSERO_RS00880 at 183.398 kb on + strand, within HSERO_RS00880 at 183.414 kb on + strand, within HSERO_RS00880 at 183.553 kb on + strand, within HSERO_RS00880 at 183.734 kb on - strand, within HSERO_RS00880 at 183.736 kb on + strand, within HSERO_RS00880 at 183.736 kb on + strand, within HSERO_RS00880 at 183.802 kb on - strand, within HSERO_RS00880 at 183.836 kb on - strand at 183.836 kb on - strand at 183.836 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 181,089 - HSERO_RS00870 0.46 -0.1 181,146 + HSERO_RS00870 0.51 -0.9 181,172 - HSERO_RS00870 0.53 -0.1 181,185 + HSERO_RS00870 0.54 +0.3 181,267 + HSERO_RS00870 0.61 -0.4 181,275 - HSERO_RS00870 0.62 -0.2 181,465 + HSERO_RS00870 0.79 -0.0 181,465 + HSERO_RS00870 0.79 -0.0 181,589 - HSERO_RS00870 0.90 +0.2 181,763 + -0.0 181,763 + +0.8 181,824 + -0.4 181,906 + +0.4 181,914 - -0.8 181,972 - -0.5 182,195 - HSERO_RS00875 0.26 +0.3 182,253 + HSERO_RS00875 0.31 +0.4 182,276 - HSERO_RS00875 0.34 -0.1 182,299 - HSERO_RS00875 0.36 -1.9 182,321 + HSERO_RS00875 0.38 +1.1 182,531 - HSERO_RS00875 0.59 -0.9 182,558 + HSERO_RS00875 0.62 +0.4 182,625 - HSERO_RS00875 0.68 -0.2 182,653 - HSERO_RS00875 0.71 -0.6 182,655 + HSERO_RS00875 0.71 +0.5 182,728 + HSERO_RS00875 0.78 -0.5 182,819 + HSERO_RS00875 0.87 +0.4 182,846 - -0.2 182,846 - +1.7 182,893 - -0.7 183,089 - HSERO_RS00880 0.14 -0.5 183,163 + HSERO_RS00880 0.21 +0.3 183,199 + HSERO_RS00880 0.25 +2.3 183,398 + HSERO_RS00880 0.46 +0.2 183,414 + HSERO_RS00880 0.48 +0.3 183,553 + HSERO_RS00880 0.63 -0.2 183,734 - HSERO_RS00880 0.82 +0.6 183,736 + HSERO_RS00880 0.82 -2.0 183,736 + HSERO_RS00880 0.82 -0.5 183,802 - HSERO_RS00880 0.89 +0.2 183,836 - +0.7 183,836 - -0.8 183,836 - -0.4
Or see this region's nucleotide sequence