Strain Fitness in Shewanella oneidensis MR-1 around SOA0165

Experiment: Fumarate, anaerobic, 1G configuration

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSOA0164 and SOA0165 are separated by 335 nucleotidesSOA0165 and SO_A0166 are separated by 63 nucleotidesSO_A0166 and SOA0167 are separated by 33 nucleotides SOA0164: SOA0164 - iron-containing alcohol dehydrogenase (NCBI ptt file), at 152,606 to 153,757 SOA0164 SOA0165: SOA0165 - transcriptional regulator, LysR family (NCBI ptt file), at 154,093 to 154,962 SOA0165 SO_A0166: SO_A0166 - no description, at 155,026 to 155,268 _A0166 SOA0167: SOA0167 - ISSod9, transposase (NCBI ptt file), at 155,302 to 158,268 SOA0167 Position (kb) 154 155Strain fitness (log2 ratio) -2 -1 0 1 2 3at 153.102 kb on - strand, within SOA0164at 153.148 kb on + strand, within SOA0164at 153.160 kb on - strand, within SOA0164at 153.176 kb on + strand, within SOA0164at 153.184 kb on - strand, within SOA0164at 153.223 kb on + strand, within SOA0164at 153.223 kb on + strand, within SOA0164at 153.223 kb on + strand, within SOA0164at 153.223 kb on + strand, within SOA0164at 153.226 kb on - strand, within SOA0164at 153.231 kb on - strand, within SOA0164at 153.231 kb on - strand, within SOA0164at 153.238 kb on - strand, within SOA0164at 153.332 kb on + strand, within SOA0164at 153.347 kb on - strand, within SOA0164at 153.347 kb on - strand, within SOA0164at 153.367 kb on + strand, within SOA0164at 153.393 kb on + strand, within SOA0164at 153.393 kb on + strand, within SOA0164at 153.393 kb on + strand, within SOA0164at 153.393 kb on + strand, within SOA0164at 153.401 kb on - strand, within SOA0164at 153.401 kb on - strand, within SOA0164at 153.401 kb on - strand, within SOA0164at 153.401 kb on - strand, within SOA0164at 153.401 kb on - strand, within SOA0164at 153.402 kb on - strand, within SOA0164at 153.413 kb on - strand, within SOA0164at 153.444 kb on - strand, within SOA0164at 153.450 kb on + strand, within SOA0164at 153.451 kb on - strand, within SOA0164at 153.451 kb on - strand, within SOA0164at 153.453 kb on - strand, within SOA0164at 153.453 kb on - strand, within SOA0164at 153.458 kb on - strand, within SOA0164at 153.514 kb on + strand, within SOA0164at 153.514 kb on + strand, within SOA0164at 153.516 kb on + strand, within SOA0164at 153.516 kb on + strand, within SOA0164at 153.516 kb on + strand, within SOA0164at 153.517 kb on - strand, within SOA0164at 153.522 kb on - strand, within SOA0164at 153.522 kb on - strand, within SOA0164at 153.522 kb on - strandat 153.522 kb on - strand, within SOA0164at 153.524 kb on - strand, within SOA0164at 153.524 kb on - strand, within SOA0164at 153.524 kb on - strand, within SOA0164at 153.529 kb on - strand, within SOA0164at 153.560 kb on - strand, within SOA0164at 153.561 kb on - strand, within SOA0164at 153.587 kb on - strand, within SOA0164at 153.592 kb on - strand, within SOA0164at 153.603 kb on + strand, within SOA0164at 153.603 kb on + strand, within SOA0164at 153.611 kb on - strand, within SOA0164at 153.611 kb on - strand, within SOA0164at 153.656 kb on - strandat 153.685 kb on + strandat 153.728 kb on + strandat 153.728 kb on + strandat 153.736 kb on - strandat 153.736 kb on - strandat 153.736 kb on - strandat 153.763 kb on - strandat 153.810 kb on + strandat 153.828 kb on + strandat 153.828 kb on + strandat 153.828 kb on + strandat 153.828 kb on + strandat 153.828 kb on + strandat 153.836 kb on - strandat 153.836 kb on - strandat 153.836 kb on - strandat 153.841 kb on - strandat 153.849 kb on - strandat 153.973 kb on + strandat 153.973 kb on + strandat 153.973 kb on + strandat 153.991 kb on - strandat 154.145 kb on - strandat 154.150 kb on + strandat 154.190 kb on + strand, within SOA0165at 154.191 kb on - strand, within SOA0165at 154.195 kb on + strand, within SOA0165at 154.196 kb on - strand, within SOA0165at 154.200 kb on + strand, within SOA0165at 154.201 kb on - strand, within SOA0165at 154.208 kb on - strand, within SOA0165at 154.226 kb on + strand, within SOA0165at 154.226 kb on + strand, within SOA0165at 154.234 kb on - strand, within SOA0165at 154.234 kb on - strand, within SOA0165at 154.247 kb on - strand, within SOA0165at 154.258 kb on + strand, within SOA0165at 154.258 kb on - strand, within SOA0165at 154.258 kb on - strand, within SOA0165at 154.276 kb on + strand, within SOA0165at 154.286 kb on + strand, within SOA0165at 154.301 kb on + strand, within SOA0165at 154.304 kb on - strand, within SOA0165at 154.316 kb on + strand, within SOA0165at 154.316 kb on + strand, within SOA0165at 154.316 kb on + strand, within SOA0165at 154.316 kb on + strand, within SOA0165at 154.316 kb on + strand, within SOA0165at 154.316 kb on + strand, within SOA0165at 154.316 kb on + strand, within SOA0165at 154.316 kb on + strand, within SOA0165at 154.316 kb on + strand, within SOA0165at 154.316 kb on + strand, within SOA0165at 154.316 kb on + strand, within SOA0165at 154.316 kb on + strand, within SOA0165at 154.324 kb on - strand, within SOA0165at 154.324 kb on - strand, within SOA0165at 154.324 kb on - strand, within SOA0165at 154.324 kb on - strand, within SOA0165at 154.324 kb on - strand, within SOA0165at 154.324 kb on - strand, within SOA0165at 154.324 kb on - strand, within SOA0165at 154.324 kb on - strand, within SOA0165at 154.324 kb on - strand, within SOA0165at 154.324 kb on - strand, within SOA0165at 154.345 kb on + strand, within SOA0165at 154.357 kb on + strand, within SOA0165at 154.445 kb on + strand, within SOA0165at 154.502 kb on - strand, within SOA0165at 154.504 kb on + strand, within SOA0165at 154.518 kb on - strand, within SOA0165at 154.533 kb on + strand, within SOA0165at 154.533 kb on + strand, within SOA0165at 154.533 kb on + strand, within SOA0165at 154.541 kb on - strand, within SOA0165at 154.541 kb on - strand, within SOA0165at 154.541 kb on - strand, within SOA0165at 154.541 kb on - strand, within SOA0165at 154.579 kb on + strand, within SOA0165at 154.595 kb on + strand, within SOA0165at 154.595 kb on + strand, within SOA0165at 154.624 kb on + strand, within SOA0165at 154.635 kb on + strand, within SOA0165at 154.648 kb on + strand, within SOA0165at 154.650 kb on + strand, within SOA0165at 154.650 kb on + strand, within SOA0165at 154.650 kb on + strand, within SOA0165at 154.650 kb on + strand, within SOA0165at 154.650 kb on + strand, within SOA0165at 154.658 kb on - strand, within SOA0165at 154.658 kb on - strandat 154.658 kb on - strand, within SOA0165at 154.658 kb on - strand, within SOA0165at 154.662 kb on + strand, within SOA0165at 154.670 kb on + strand, within SOA0165at 154.670 kb on - strand, within SOA0165at 154.678 kb on - strand, within SOA0165at 154.727 kb on - strand, within SOA0165at 154.737 kb on - strand, within SOA0165at 154.748 kb on + strand, within SOA0165at 154.806 kb on - strand, within SOA0165at 154.848 kb on - strand, within SOA0165at 154.886 kb on - strandat 154.951 kb on + strandat 154.951 kb on + strandat 154.958 kb on + strandat 154.959 kb on - strandat 154.981 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate, anaerobic, 1G configuration
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153,102 - SOA0164 0.43 +0.3
153,148 + SOA0164 0.47 -0.1
153,160 - SOA0164 0.48 +0.5
153,176 + SOA0164 0.49 -0.2
153,184 - SOA0164 0.50 -0.2
153,223 + SOA0164 0.54 +0.3
153,223 + SOA0164 0.54 +0.3
153,223 + SOA0164 0.54 +0.4
153,223 + SOA0164 0.54 -0.3
153,226 - SOA0164 0.54 +0.2
153,231 - SOA0164 0.54 +0.7
153,231 - SOA0164 0.54 +0.4
153,238 - SOA0164 0.55 +0.0
153,332 + SOA0164 0.63 -0.1
153,347 - SOA0164 0.64 -0.3
153,347 - SOA0164 0.64 -1.2
153,367 + SOA0164 0.66 +0.3
153,393 + SOA0164 0.68 -0.4
153,393 + SOA0164 0.68 -0.0
153,393 + SOA0164 0.68 -0.0
153,393 + SOA0164 0.68 -0.1
153,401 - SOA0164 0.69 -0.0
153,401 - SOA0164 0.69 +1.4
153,401 - SOA0164 0.69 +0.4
153,401 - SOA0164 0.69 -0.0
153,401 - SOA0164 0.69 +0.5
153,402 - SOA0164 0.69 +0.6
153,413 - SOA0164 0.70 -0.2
153,444 - SOA0164 0.73 -0.5
153,450 + SOA0164 0.73 +0.6
153,451 - SOA0164 0.73 +1.3
153,451 - SOA0164 0.73 +0.5
153,453 - SOA0164 0.74 -0.9
153,453 - SOA0164 0.74 +0.3
153,458 - SOA0164 0.74 +1.3
153,514 + SOA0164 0.79 -0.0
153,514 + SOA0164 0.79 -0.2
153,516 + SOA0164 0.79 +0.3
153,516 + SOA0164 0.79 +0.5
153,516 + SOA0164 0.79 +0.1
153,517 - SOA0164 0.79 -0.6
153,522 - SOA0164 0.80 -0.4
153,522 - SOA0164 0.80 -0.1
153,522 - -0.8
153,522 - SOA0164 0.80 +0.7
153,524 - SOA0164 0.80 -1.1
153,524 - SOA0164 0.80 +0.9
153,524 - SOA0164 0.80 +0.1
153,529 - SOA0164 0.80 +0.6
153,560 - SOA0164 0.83 +0.1
153,561 - SOA0164 0.83 +0.4
153,587 - SOA0164 0.85 +0.5
153,592 - SOA0164 0.86 +0.3
153,603 + SOA0164 0.87 +0.1
153,603 + SOA0164 0.87 +0.9
153,611 - SOA0164 0.87 +0.3
153,611 - SOA0164 0.87 +0.9
153,656 - +0.2
153,685 + +0.8
153,728 + -0.8
153,728 + +0.1
153,736 - +0.3
153,736 - -0.6
153,736 - -0.4
153,763 - +0.3
153,810 + -0.6
153,828 + -0.1
153,828 + +0.8
153,828 + +0.8
153,828 + -0.7
153,828 + +0.1
153,836 - -2.5
153,836 - -1.1
153,836 - +0.1
153,841 - +0.4
153,849 - +0.5
153,973 + +0.0
153,973 + +0.6
153,973 + +0.2
153,991 - +0.3
154,145 - +0.3
154,150 + -0.5
154,190 + SOA0165 0.11 +0.1
154,191 - SOA0165 0.11 -0.2
154,195 + SOA0165 0.12 -1.2
154,196 - SOA0165 0.12 +0.2
154,200 + SOA0165 0.12 -0.1
154,201 - SOA0165 0.12 +0.4
154,208 - SOA0165 0.13 -0.7
154,226 + SOA0165 0.15 +0.1
154,226 + SOA0165 0.15 -0.2
154,234 - SOA0165 0.16 -0.2
154,234 - SOA0165 0.16 -0.6
154,247 - SOA0165 0.18 +0.8
154,258 + SOA0165 0.19 +0.2
154,258 - SOA0165 0.19 +0.4
154,258 - SOA0165 0.19 -0.5
154,276 + SOA0165 0.21 +0.7
154,286 + SOA0165 0.22 +2.9
154,301 + SOA0165 0.24 -0.2
154,304 - SOA0165 0.24 -0.4
154,316 + SOA0165 0.26 +0.3
154,316 + SOA0165 0.26 +0.8
154,316 + SOA0165 0.26 -0.3
154,316 + SOA0165 0.26 +0.8
154,316 + SOA0165 0.26 -0.0
154,316 + SOA0165 0.26 +0.3
154,316 + SOA0165 0.26 -0.1
154,316 + SOA0165 0.26 +0.6
154,316 + SOA0165 0.26 +0.4
154,316 + SOA0165 0.26 -0.1
154,316 + SOA0165 0.26 +1.1
154,316 + SOA0165 0.26 +0.1
154,324 - SOA0165 0.27 +1.3
154,324 - SOA0165 0.27 +1.9
154,324 - SOA0165 0.27 -0.5
154,324 - SOA0165 0.27 +0.1
154,324 - SOA0165 0.27 -0.2
154,324 - SOA0165 0.27 +1.6
154,324 - SOA0165 0.27 +0.2
154,324 - SOA0165 0.27 -0.7
154,324 - SOA0165 0.27 -0.3
154,324 - SOA0165 0.27 +0.0
154,345 + SOA0165 0.29 +0.3
154,357 + SOA0165 0.30 -0.4
154,445 + SOA0165 0.40 -0.2
154,502 - SOA0165 0.47 -0.7
154,504 + SOA0165 0.47 -0.8
154,518 - SOA0165 0.49 +0.2
154,533 + SOA0165 0.51 -0.5
154,533 + SOA0165 0.51 +1.3
154,533 + SOA0165 0.51 +0.3
154,541 - SOA0165 0.51 -0.5
154,541 - SOA0165 0.51 -0.9
154,541 - SOA0165 0.51 +0.1
154,541 - SOA0165 0.51 +0.6
154,579 + SOA0165 0.56 +0.3
154,595 + SOA0165 0.58 -0.1
154,595 + SOA0165 0.58 +0.2
154,624 + SOA0165 0.61 -0.2
154,635 + SOA0165 0.62 -0.4
154,648 + SOA0165 0.64 +0.2
154,650 + SOA0165 0.64 -0.9
154,650 + SOA0165 0.64 +0.8
154,650 + SOA0165 0.64 -0.1
154,650 + SOA0165 0.64 +0.9
154,650 + SOA0165 0.64 -0.4
154,658 - SOA0165 0.65 -0.3
154,658 - -0.2
154,658 - SOA0165 0.65 -0.4
154,658 - SOA0165 0.65 -0.1
154,662 + SOA0165 0.65 +0.1
154,670 + SOA0165 0.66 +0.3
154,670 - SOA0165 0.66 -1.1
154,678 - SOA0165 0.67 +0.2
154,727 - SOA0165 0.73 +0.3
154,737 - SOA0165 0.74 -0.4
154,748 + SOA0165 0.75 -0.2
154,806 - SOA0165 0.82 -0.2
154,848 - SOA0165 0.87 -0.5
154,886 - -0.2
154,951 + +0.5
154,951 + -0.1
154,958 + +0.2
154,959 - +0.3
154,981 + -0.2

Or see this region's nucleotide sequence