Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22575 and HSERO_RS22580 are separated by 136 nucleotides HSERO_RS22580 and HSERO_RS22585 are separated by 13 nucleotides HSERO_RS22585 and HSERO_RS22590 are separated by 305 nucleotides
HSERO_RS22575: HSERO_RS22575 - arylesterase, at 5,177,244 to 5,178,071
_RS22575
HSERO_RS22580: HSERO_RS22580 - LysR family transcriptional regulator, at 5,178,208 to 5,178,630
_RS22580
HSERO_RS22585: HSERO_RS22585 - amidohydrolase, at 5,178,644 to 5,180,527
_RS22585
HSERO_RS22590: HSERO_RS22590 - hydrolase, at 5,180,833 to 5,181,522
_RS22590
Position (kb) 5178
5179
5180
5181 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5177.909 kb on + strand, within HSERO_RS22575 at 5177.917 kb on - strand, within HSERO_RS22575 at 5178.066 kb on + strand at 5178.211 kb on + strand at 5178.341 kb on + strand, within HSERO_RS22580 at 5178.471 kb on - strand, within HSERO_RS22580 at 5178.510 kb on - strand, within HSERO_RS22580 at 5178.535 kb on - strand, within HSERO_RS22580 at 5178.914 kb on - strand, within HSERO_RS22585 at 5178.960 kb on - strand, within HSERO_RS22585 at 5179.043 kb on - strand, within HSERO_RS22585 at 5179.124 kb on - strand, within HSERO_RS22585 at 5179.158 kb on + strand, within HSERO_RS22585 at 5179.163 kb on + strand, within HSERO_RS22585 at 5179.163 kb on + strand, within HSERO_RS22585 at 5179.166 kb on - strand, within HSERO_RS22585 at 5179.166 kb on - strand, within HSERO_RS22585 at 5179.173 kb on + strand, within HSERO_RS22585 at 5179.173 kb on + strand, within HSERO_RS22585 at 5179.173 kb on + strand, within HSERO_RS22585 at 5179.188 kb on - strand at 5179.474 kb on + strand, within HSERO_RS22585 at 5179.707 kb on + strand, within HSERO_RS22585 at 5179.734 kb on - strand, within HSERO_RS22585 at 5179.745 kb on + strand, within HSERO_RS22585 at 5179.799 kb on + strand, within HSERO_RS22585 at 5179.847 kb on + strand, within HSERO_RS22585 at 5179.890 kb on - strand, within HSERO_RS22585 at 5179.918 kb on + strand, within HSERO_RS22585 at 5179.938 kb on - strand, within HSERO_RS22585 at 5180.028 kb on - strand, within HSERO_RS22585 at 5180.161 kb on - strand, within HSERO_RS22585 at 5180.219 kb on - strand, within HSERO_RS22585 at 5180.277 kb on - strand, within HSERO_RS22585 at 5180.469 kb on + strand at 5180.505 kb on - strand at 5180.695 kb on + strand at 5181.042 kb on - strand, within HSERO_RS22590 at 5181.052 kb on - strand, within HSERO_RS22590 at 5181.102 kb on + strand, within HSERO_RS22590 at 5181.113 kb on + strand, within HSERO_RS22590 at 5181.266 kb on + strand, within HSERO_RS22590 at 5181.277 kb on + strand, within HSERO_RS22590 at 5181.399 kb on - strand, within HSERO_RS22590 at 5181.433 kb on + strand at 5181.433 kb on + strand, within HSERO_RS22590 at 5181.459 kb on + strand at 5181.467 kb on - strand at 5181.467 kb on - strand at 5181.472 kb on - strand at 5181.472 kb on - strand at 5181.497 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 5,177,909 + HSERO_RS22575 0.80 -0.9 5,177,917 - HSERO_RS22575 0.81 +0.7 5,178,066 + -0.1 5,178,211 + -0.6 5,178,341 + HSERO_RS22580 0.31 +0.2 5,178,471 - HSERO_RS22580 0.62 -0.8 5,178,510 - HSERO_RS22580 0.71 +0.6 5,178,535 - HSERO_RS22580 0.77 +1.0 5,178,914 - HSERO_RS22585 0.14 +0.4 5,178,960 - HSERO_RS22585 0.17 -0.0 5,179,043 - HSERO_RS22585 0.21 -0.3 5,179,124 - HSERO_RS22585 0.25 -0.5 5,179,158 + HSERO_RS22585 0.27 -1.4 5,179,163 + HSERO_RS22585 0.28 -0.4 5,179,163 + HSERO_RS22585 0.28 -1.1 5,179,166 - HSERO_RS22585 0.28 -0.8 5,179,166 - HSERO_RS22585 0.28 -0.1 5,179,173 + HSERO_RS22585 0.28 -0.2 5,179,173 + HSERO_RS22585 0.28 -0.5 5,179,173 + HSERO_RS22585 0.28 -0.4 5,179,188 - -0.5 5,179,474 + HSERO_RS22585 0.44 +0.3 5,179,707 + HSERO_RS22585 0.56 -1.2 5,179,734 - HSERO_RS22585 0.58 -0.5 5,179,745 + HSERO_RS22585 0.58 -0.8 5,179,799 + HSERO_RS22585 0.61 -1.0 5,179,847 + HSERO_RS22585 0.64 -1.1 5,179,890 - HSERO_RS22585 0.66 +0.1 5,179,918 + HSERO_RS22585 0.68 +0.3 5,179,938 - HSERO_RS22585 0.69 -0.6 5,180,028 - HSERO_RS22585 0.73 -2.9 5,180,161 - HSERO_RS22585 0.81 -0.2 5,180,219 - HSERO_RS22585 0.84 -0.3 5,180,277 - HSERO_RS22585 0.87 -2.4 5,180,469 + +0.6 5,180,505 - +0.4 5,180,695 + -0.6 5,181,042 - HSERO_RS22590 0.30 -1.3 5,181,052 - HSERO_RS22590 0.32 -0.5 5,181,102 + HSERO_RS22590 0.39 -0.6 5,181,113 + HSERO_RS22590 0.41 -0.7 5,181,266 + HSERO_RS22590 0.63 -0.8 5,181,277 + HSERO_RS22590 0.64 -0.0 5,181,399 - HSERO_RS22590 0.82 -0.8 5,181,433 + +3.2 5,181,433 + HSERO_RS22590 0.87 +0.3 5,181,459 + -1.1 5,181,467 - +0.3 5,181,467 - +0.6 5,181,472 - +0.2 5,181,472 - +1.8 5,181,497 - -0.1
Or see this region's nucleotide sequence