Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21195

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
4,847,444	+		HSERO_RS21190	0.47	+0.2
4,847,452	-		HSERO_RS21190	0.48	-0.1
4,847,453	-		HSERO_RS21190	0.48	-0.8
4,847,471	+		HSERO_RS21190	0.49	-0.3
4,847,511	+				+0.9
4,847,519	-		HSERO_RS21190	0.52	-0.2
4,847,604	+		HSERO_RS21190	0.58	-0.2
4,847,612	-		HSERO_RS21190	0.58	-0.1
4,847,851	-		HSERO_RS21190	0.73	-1.4
4,847,959	-		HSERO_RS21190	0.80	-0.4
4,848,082	+		HSERO_RS21190	0.88	+0.1
4,848,095	-		HSERO_RS21190	0.89	-0.4
4,848,295	-				-0.2
4,848,482	+		HSERO_RS21195	0.12	-0.2
4,848,492	+		HSERO_RS21195	0.13	-1.1
4,848,597	+		HSERO_RS21195	0.20	-0.7
4,848,681	-		HSERO_RS21195	0.27	-0.5
4,848,693	+		HSERO_RS21195	0.27	-0.4
4,848,739	+		HSERO_RS21195	0.31	-0.3
4,848,995	+		HSERO_RS21195	0.50	+0.3
4,849,084	-		HSERO_RS21195	0.56	+0.4
4,849,089	-		HSERO_RS21195	0.56	-0.4
4,849,177	-		HSERO_RS21195	0.63	+0.4
4,849,186	+		HSERO_RS21195	0.63	-1.0
4,849,212	-		HSERO_RS21195	0.65	-0.5
4,849,230	-		HSERO_RS21195	0.67	-1.6
4,849,302	-				-0.0
4,849,533	+		HSERO_RS21195	0.89	+0.7
4,849,541	-		HSERO_RS21195	0.89	-0.6
4,849,595	-				-0.3
4,849,636	-				-0.1
4,849,708	+				+0.2
4,849,708	+				-0.4
4,849,748	-				+0.5
4,849,788	-				+1.3
4,849,788	-				-1.1
4,849,865	+				-0.0
4,849,975	-		HSERO_RS21200	0.14	+0.3
4,850,157	+		HSERO_RS21200	0.26	-2.3
4,850,182	+		HSERO_RS21200	0.28	-1.1
4,850,450	+		HSERO_RS21200	0.46	-2.0
4,850,594	+		HSERO_RS21200	0.55	+0.1
4,850,602	-		HSERO_RS21200	0.56	+0.0
4,850,649	+		HSERO_RS21200	0.59	-0.9