Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16130

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,680,735	+		HSERO_RS16125	0.30	-0.3
3,680,741	+		HSERO_RS16125	0.31	-1.3
3,680,741	+		HSERO_RS16125	0.31	-0.6
3,680,741	+		HSERO_RS16125	0.31	-0.0
3,680,748	-		HSERO_RS16125	0.32	-1.9
3,680,748	-		HSERO_RS16125	0.32	-1.1
3,680,749	-		HSERO_RS16125	0.32	-0.7
3,680,749	-		HSERO_RS16125	0.32	-0.9
3,680,749	-		HSERO_RS16125	0.32	-2.1
3,680,755	+		HSERO_RS16125	0.32	+0.1
3,680,758	-		HSERO_RS16125	0.33	+0.2
3,680,759	-		HSERO_RS16125	0.33	-0.0
3,680,765	+		HSERO_RS16125	0.33	+1.1
3,680,765	+		HSERO_RS16125	0.33	+0.3
3,680,773	+		HSERO_RS16125	0.34	-0.1
3,680,773	-		HSERO_RS16125	0.34	+0.2
3,680,773	-		HSERO_RS16125	0.34	-0.5
3,680,785	-		HSERO_RS16125	0.35	+0.4
3,680,785	-		HSERO_RS16125	0.35	-0.1
3,680,792	-		HSERO_RS16125	0.36	-0.9
3,680,820	-		HSERO_RS16125	0.39	+0.8
3,680,821	+		HSERO_RS16125	0.39	-0.6
3,680,821	+		HSERO_RS16125	0.39	+0.4
3,680,821	+				+0.6
3,680,821	+		HSERO_RS16125	0.39	+0.7
3,680,821	+		HSERO_RS16125	0.39	+0.0
3,680,821	+		HSERO_RS16125	0.39	-0.2
3,680,821	+		HSERO_RS16125	0.39	+1.9
3,680,821	+		HSERO_RS16125	0.39	-0.2
3,680,821	+		HSERO_RS16125	0.39	-0.9
3,680,821	+		HSERO_RS16125	0.39	-0.9
3,680,821	+		HSERO_RS16125	0.39	-0.6
3,680,829	-		HSERO_RS16125	0.40	-0.4
3,680,829	-		HSERO_RS16125	0.40	-0.3
3,680,829	-		HSERO_RS16125	0.40	-0.8
3,680,829	-				+1.2
3,680,829	-		HSERO_RS16125	0.40	-0.2
3,680,829	-		HSERO_RS16125	0.40	+0.4
3,680,829	-		HSERO_RS16125	0.40	+0.5
3,680,829	-		HSERO_RS16125	0.40	+1.2
3,680,829	-		HSERO_RS16125	0.40	-0.8
3,680,829	-		HSERO_RS16125	0.40	+0.3
3,680,834	+		HSERO_RS16125	0.41	+0.4
3,680,836	-		HSERO_RS16125	0.41	+0.0
3,680,836	-		HSERO_RS16125	0.41	-0.8
3,680,836	-		HSERO_RS16125	0.41	-0.2
3,680,836	-		HSERO_RS16125	0.41	+0.1
3,680,836	-		HSERO_RS16125	0.41	-0.6
3,680,837	-		HSERO_RS16125	0.41	+0.3
3,680,907	+		HSERO_RS16125	0.48	-0.3
3,680,909	-		HSERO_RS16125	0.48	-0.4
3,680,912	+		HSERO_RS16125	0.49	-0.4
3,680,920	-		HSERO_RS16125	0.49	+0.0
3,680,966	-		HSERO_RS16125	0.54	+0.0
3,680,971	+		HSERO_RS16125	0.55	-0.2
3,680,977	+		HSERO_RS16125	0.55	-0.6
3,680,977	+		HSERO_RS16125	0.55	+0.6
3,680,981	+				-0.4
3,680,985	-		HSERO_RS16125	0.56	+0.5
3,680,985	-		HSERO_RS16125	0.56	-2.1
3,680,989	-		HSERO_RS16125	0.57	+0.2
3,680,994	-		HSERO_RS16125	0.57	-0.9
3,681,041	-		HSERO_RS16125	0.62	-0.6
3,681,051	+		HSERO_RS16125	0.63	-0.2
3,681,059	-		HSERO_RS16125	0.64	+1.4
3,681,081	-		HSERO_RS16125	0.66	-1.5
3,681,083	+		HSERO_RS16125	0.66	-0.4
3,681,083	+		HSERO_RS16125	0.66	+0.1
3,681,091	-		HSERO_RS16125	0.67	-0.5
3,681,091	-		HSERO_RS16125	0.67	+0.3
3,681,100	+		HSERO_RS16125	0.68	-0.1
3,681,108	-		HSERO_RS16125	0.69	-0.6
3,681,108	-		HSERO_RS16125	0.69	-0.4
3,681,108	-		HSERO_RS16125	0.69	+0.0
3,681,145	-		HSERO_RS16125	0.73	+0.1
3,681,152	+		HSERO_RS16125	0.74	-2.4
3,681,188	+		HSERO_RS16125	0.77	-0.2
3,681,195	+		HSERO_RS16125	0.78	-1.1
3,681,195	+		HSERO_RS16125	0.78	-0.0
3,681,200	+		HSERO_RS16125	0.79	-0.1
3,681,203	-		HSERO_RS16125	0.79	-0.7
3,681,204	+		HSERO_RS16125	0.79	+0.2
3,681,205	+		HSERO_RS16125	0.79	+0.8
3,681,213	-		HSERO_RS16125	0.80	+0.3
3,681,249	-		HSERO_RS16125	0.84	-0.1
3,681,260	-		HSERO_RS16125	0.85	+1.5
3,681,278	+		HSERO_RS16125	0.87	+0.1
3,681,284	-		HSERO_RS16125	0.87	+0.0
3,681,286	-		HSERO_RS16125	0.88	-0.7
3,681,286	-		HSERO_RS16125	0.88	-0.7
3,681,311	+				+0.1
3,681,311	+				-0.5
3,681,311	+				-0.5
3,681,319	-				-0.5
3,681,319	-				-1.4
3,681,322	+				-0.8
3,681,322	+				-0.1
3,681,322	+				-0.4
3,681,330	-				+0.2
3,681,330	-				+0.2
3,681,330	-				+1.7
3,681,330	-				+0.1
3,681,349	+				-0.8
3,681,355	+				+0.2
3,681,357	-				+2.6
3,681,363	-				+1.5
3,681,373	+				+0.3
3,681,384	+				-0.7
3,681,391	-				-0.7
3,681,392	+				-1.3
3,681,392	+				-0.0
3,681,397	+				+0.0
3,681,405	-				-1.7
3,681,429	+				-0.0
3,681,444	+				-0.5
3,681,452	-				-0.7
3,681,452	-				-1.7
3,681,452	-				+1.1
3,681,452	-				-0.2
3,681,482	-				-0.3
3,681,484	+				-0.9
3,681,494	+				+0.5
3,681,502	-				+0.3
3,681,502	-				-0.5
3,681,519	+				+1.8
3,681,519	+				-0.2
3,681,519	+				+0.2
3,681,548	-				+1.1
3,681,548	-				-0.4
3,681,550	+				+0.5
3,681,550	+				+0.9
3,681,553	-				-0.3
3,681,553	-				-0.5
3,681,553	-				+0.2
3,681,572	+				-0.1
3,681,582	+				-1.0
3,681,602	+				-1.4
3,681,628	-				+0.3
3,681,641	-				+0.5
3,681,649	+				-0.0
3,681,667	-				+0.0
3,681,700	+				-0.4
3,681,700	+				-0.6
3,681,700	+				-0.2
3,681,713	-				+1.3
3,681,717	+				-0.1
3,681,717	+				-0.9
3,681,717	+				-0.4
3,681,725	-				+0.3
3,681,726	-				-0.0
3,681,746	+				-1.1
3,681,746	+				+1.1
3,681,754	-				+0.7
3,681,791	+				+0.5
3,681,797	+				-0.6
3,681,797	+				-0.6
3,681,797	+				-0.6
3,681,797	+				+0.6
3,681,797	+				+0.4
3,681,797	+				+0.6
3,681,805	-				+0.2
3,681,805	-				-0.9
3,681,824	-				+0.2
3,681,849	+		HSERO_RS16130	0.12	-0.2
3,681,849	+				-0.1
3,681,849	+		HSERO_RS16130	0.12	-1.3
3,681,849	+		HSERO_RS16130	0.12	-0.9
3,681,849	+		HSERO_RS16130	0.12	+0.2
3,681,849	+		HSERO_RS16130	0.12	+1.2
3,681,857	-		HSERO_RS16130	0.13	-0.7
3,681,857	-		HSERO_RS16130	0.13	+0.1
3,681,857	-		HSERO_RS16130	0.13	+0.2
3,681,861	-		HSERO_RS16130	0.13	-0.8
3,681,862	-		HSERO_RS16130	0.13	-0.0
3,681,862	-		HSERO_RS16130	0.13	-0.1
3,681,943	+		HSERO_RS16130	0.21	+0.0
3,681,943	+		HSERO_RS16130	0.21	+0.5
3,681,950	+		HSERO_RS16130	0.21	-1.1
3,681,951	-		HSERO_RS16130	0.22	+2.1
3,681,967	+		HSERO_RS16130	0.23	-1.9
3,681,976	-		HSERO_RS16130	0.24	-0.3
3,681,999	+		HSERO_RS16130	0.26	-0.1
3,681,999	+		HSERO_RS16130	0.26	-1.5
3,682,042	+		HSERO_RS16130	0.30	-0.2
3,682,056	+		HSERO_RS16130	0.31	+0.1
3,682,212	-		HSERO_RS16130	0.46	-0.1
3,682,249	-		HSERO_RS16130	0.49	-1.7
3,682,318	-		HSERO_RS16130	0.56	-0.3
3,682,418	+		HSERO_RS16130	0.65	-0.6
3,682,426	-		HSERO_RS16130	0.66	-0.9
3,682,521	+		HSERO_RS16130	0.75	+0.1
3,682,574	-		HSERO_RS16130	0.80	+0.4
3,682,609	+		HSERO_RS16130	0.83	-0.0
3,682,617	-		HSERO_RS16130	0.84	+0.5
3,682,676	-		HSERO_RS16130	0.89	+0.4
3,682,680	+		HSERO_RS16130	0.90	+1.2
3,682,749	+				-0.5
3,682,775	+				+0.8
3,683,186	+				-1.0
3,683,196	-				+0.1
3,683,219	+				-0.1
3,683,238	-				-0.8
3,683,360	-				-0.1
3,683,631	+		HSERO_RS16140	0.56	-1.0
3,683,650	+		HSERO_RS16140	0.59	+0.7
3,683,662	-		HSERO_RS16140	0.61	-0.4
3,683,780	+		HSERO_RS16140	0.82	+3.5
3,683,788	-		HSERO_RS16140	0.84	+1.9
3,683,788	-		HSERO_RS16140	0.84	-0.1
3,683,788	-		HSERO_RS16140	0.84	+1.3