Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS13715

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,116,157	-				-0.6
3,116,238	+				-0.0
3,116,514	-				-1.4
3,116,604	-				-0.8
3,116,760	-				-0.5
3,116,811	+				+0.7
3,116,819	-				-0.1
3,116,860	-				-0.7
3,116,967	-				+0.6
3,117,078	-		HSERO_RS13715	0.32	-0.6
3,117,224	-		HSERO_RS13715	0.64	+2.3
3,117,426	+				+1.7
3,117,496	-				-1.1
3,117,547	-				+0.3
3,117,933	+		HSERO_RS13720	0.52	-0.8
3,117,941	-		HSERO_RS13720	0.53	-0.6
3,117,951	-		HSERO_RS13720	0.54	+1.2
3,117,963	-		HSERO_RS13720	0.56	+0.2
3,118,052	+		HSERO_RS13720	0.67	-0.3
3,118,052	+		HSERO_RS13720	0.67	+1.5
3,118,186	+				+0.4
3,118,217	+		HSERO_RS13720	0.87	+1.1
3,118,272	+				+1.4