Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS11265

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,543,377	-		HSERO_RS11260	0.63	+0.5
2,543,477	+		HSERO_RS11260	0.70	-0.2
2,543,511	+		HSERO_RS11260	0.72	-0.2
2,543,519	-		HSERO_RS11260	0.73	+0.4
2,543,589	-		HSERO_RS11260	0.78	-1.9
2,544,077	-				-0.3
2,544,077	-				+1.2
2,544,077	-				-0.7
2,544,172	+				+1.3
2,544,519	+		HSERO_RS11265	0.40	-0.6
2,544,571	-		HSERO_RS11265	0.47	+0.3
2,544,571	-		HSERO_RS11265	0.47	+1.8
2,544,738	-		HSERO_RS11265	0.69	-0.2
2,544,770	-		HSERO_RS11265	0.73	+0.4
2,544,791	+		HSERO_RS11265	0.75	+1.1
2,544,883	-		HSERO_RS11265	0.87	+0.8
2,545,043	+				-0.9
2,545,358	-		HSERO_RS11270	0.32	-0.3
2,545,471	-		HSERO_RS11270	0.44	-0.0
2,545,660	+		HSERO_RS11270	0.64	+0.6
2,545,697	+				+1.5
2,545,705	-		HSERO_RS11270	0.69	-1.1
2,545,712	-		HSERO_RS11270	0.69	-0.5
2,545,872	-		HSERO_RS11270	0.86	+0.8
2,545,872	-		HSERO_RS11270	0.86	-1.4