Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02545 and HSERO_RS02550 are separated by 110 nucleotides HSERO_RS02550 and HSERO_RS02555 are separated by 400 nucleotides HSERO_RS02555 and HSERO_RS02560 are separated by 364 nucleotides
HSERO_RS02545: HSERO_RS02545 - membrane protein, at 559,765 to 560,391
_RS02545
HSERO_RS02550: HSERO_RS02550 - protamine P1 domain containing protein, at 560,502 to 560,711
_RS02550
HSERO_RS02555: HSERO_RS02555 - chemotaxis protein, at 561,112 to 562,680
_RS02555
HSERO_RS02560: HSERO_RS02560 - hypothetical protein, at 563,045 to 563,665
_RS02560
Position (kb) 561
562
563 Strain fitness (log2 ratio) -2
-1
0
1
2 at 560.224 kb on - strand, within HSERO_RS02545 at 560.274 kb on - strand, within HSERO_RS02545 at 560.378 kb on - strand at 560.406 kb on + strand at 560.414 kb on - strand at 560.414 kb on - strand at 560.801 kb on + strand at 560.855 kb on - strand at 560.876 kb on + strand at 560.948 kb on - strand at 561.134 kb on + strand at 561.252 kb on + strand at 561.270 kb on + strand, within HSERO_RS02555 at 561.410 kb on + strand, within HSERO_RS02555 at 561.434 kb on + strand, within HSERO_RS02555 at 561.575 kb on - strand, within HSERO_RS02555 at 561.624 kb on - strand at 561.661 kb on + strand, within HSERO_RS02555 at 561.669 kb on - strand, within HSERO_RS02555 at 561.726 kb on + strand, within HSERO_RS02555 at 561.743 kb on - strand, within HSERO_RS02555 at 561.879 kb on + strand, within HSERO_RS02555 at 561.892 kb on - strand, within HSERO_RS02555 at 562.219 kb on + strand, within HSERO_RS02555 at 562.275 kb on - strand, within HSERO_RS02555 at 562.317 kb on - strand, within HSERO_RS02555 at 562.345 kb on + strand at 562.398 kb on - strand, within HSERO_RS02555 at 562.696 kb on - strand at 562.861 kb on - strand at 562.874 kb on + strand at 562.881 kb on + strand at 562.948 kb on - strand at 562.952 kb on + strand at 563.023 kb on - strand at 563.139 kb on + strand, within HSERO_RS02560 at 563.159 kb on + strand, within HSERO_RS02560 at 563.499 kb on + strand, within HSERO_RS02560 at 563.633 kb on - strand at 563.662 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 560,224 - HSERO_RS02545 0.73 +0.4 560,274 - HSERO_RS02545 0.81 -2.3 560,378 - +0.7 560,406 + +0.7 560,414 - -0.5 560,414 - -0.2 560,801 + +0.1 560,855 - -0.1 560,876 + -0.6 560,948 - -0.2 561,134 + +0.3 561,252 + +0.6 561,270 + HSERO_RS02555 0.10 -1.3 561,410 + HSERO_RS02555 0.19 +0.5 561,434 + HSERO_RS02555 0.21 -0.0 561,575 - HSERO_RS02555 0.30 +0.8 561,624 - +1.4 561,661 + HSERO_RS02555 0.35 +1.0 561,669 - HSERO_RS02555 0.36 -1.8 561,726 + HSERO_RS02555 0.39 +0.8 561,743 - HSERO_RS02555 0.40 +0.3 561,879 + HSERO_RS02555 0.49 +0.6 561,892 - HSERO_RS02555 0.50 +0.2 562,219 + HSERO_RS02555 0.71 +0.7 562,275 - HSERO_RS02555 0.74 -0.7 562,317 - HSERO_RS02555 0.77 +1.2 562,345 + +2.7 562,398 - HSERO_RS02555 0.82 +1.1 562,696 - +0.1 562,861 - +1.1 562,874 + +1.6 562,881 + -0.2 562,948 - -1.2 562,952 + -1.2 563,023 - -0.5 563,139 + HSERO_RS02560 0.15 -1.3 563,159 + HSERO_RS02560 0.18 +0.9 563,499 + HSERO_RS02560 0.73 -0.9 563,633 - -0.3 563,662 + -1.3
Or see this region's nucleotide sequence