Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02240
Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | C.elegans, mixed culture-2 |
---|---|---|---|---|---|
remove | |||||
488,944 | + | +0.8 | |||
488,980 | - | +0.6 | |||
489,000 | - | -1.1 | |||
489,019 | - | -0.0 | |||
489,037 | + | HSERO_RS02235 | 0.11 | +0.7 | |
489,168 | - | HSERO_RS02235 | 0.28 | +0.6 | |
489,168 | - | HSERO_RS02235 | 0.28 | +1.4 | |
489,325 | + | HSERO_RS02235 | 0.47 | -0.9 | |
489,464 | - | HSERO_RS02235 | 0.64 | +0.9 | |
489,696 | - | +0.2 | |||
489,762 | - | -0.7 | |||
490,003 | - | HSERO_RS02240 | 0.25 | +0.1 | |
490,909 | - | +0.0 | |||
491,043 | - | HSERO_RS02245 | 0.32 | -1.9 | |
491,075 | - | HSERO_RS02245 | 0.39 | -0.5 | |
491,095 | - | HSERO_RS02245 | 0.44 | -0.6 | |
491,326 | + | +1.1 | |||
491,392 | + | -0.2 | |||
491,446 | - | +0.3 | |||
491,495 | + | -1.1 | |||
491,503 | - | +0.8 | |||
491,713 | + | HSERO_RS02250 | 0.34 | +1.6 |
Or see this region's nucleotide sequence