Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02235

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02230 and HSERO_RS02235 are separated by 429 nucleotidesHSERO_RS02235 and HSERO_RS02240 are separated by 8 nucleotides HSERO_RS02230: HSERO_RS02230 - methyl-accepting chemotaxis protein, at 486,954 to 488,516 _RS02230 HSERO_RS02235: HSERO_RS02235 - membrane protein, at 488,946 to 489,752 _RS02235 HSERO_RS02240: HSERO_RS02240 - homoserine kinase, at 489,761 to 490,717 _RS02240 Position (kb) 488 489 490Strain fitness (log2 ratio) -1 0 1 2at 488.050 kb on - strand, within HSERO_RS02230at 488.138 kb on - strandat 488.164 kb on + strand, within HSERO_RS02230at 488.238 kb on + strand, within HSERO_RS02230at 488.278 kb on + strand, within HSERO_RS02230at 488.285 kb on - strand, within HSERO_RS02230at 488.400 kb on - strandat 488.441 kb on - strandat 488.524 kb on - strandat 488.944 kb on + strandat 488.980 kb on - strandat 489.000 kb on - strandat 489.019 kb on - strandat 489.037 kb on + strand, within HSERO_RS02235at 489.168 kb on - strand, within HSERO_RS02235at 489.168 kb on - strand, within HSERO_RS02235at 489.325 kb on + strand, within HSERO_RS02235at 489.464 kb on - strand, within HSERO_RS02235at 489.696 kb on - strandat 489.762 kb on - strandat 490.003 kb on - strand, within HSERO_RS02240

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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488,050 - HSERO_RS02230 0.70 +1.2
488,138 - +2.3
488,164 + HSERO_RS02230 0.77 +0.5
488,238 + HSERO_RS02230 0.82 +1.1
488,278 + HSERO_RS02230 0.85 +0.2
488,285 - HSERO_RS02230 0.85 +1.1
488,400 - +1.7
488,441 - +0.5
488,524 - -0.9
488,944 + +0.8
488,980 - +0.6
489,000 - -1.1
489,019 - -0.0
489,037 + HSERO_RS02235 0.11 +0.7
489,168 - HSERO_RS02235 0.28 +0.6
489,168 - HSERO_RS02235 0.28 +1.4
489,325 + HSERO_RS02235 0.47 -0.9
489,464 - HSERO_RS02235 0.64 +0.9
489,696 - +0.2
489,762 - -0.7
490,003 - HSERO_RS02240 0.25 +0.1

Or see this region's nucleotide sequence