Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02220 and HSERO_RS02225 are separated by 19 nucleotides HSERO_RS02225 and HSERO_RS02230 are separated by 42 nucleotides
HSERO_RS02220: HSERO_RS02220 - xylulokinase, at 484,958 to 486,430
_RS02220
HSERO_RS02225: HSERO_RS02225 - acetyltransferase, at 486,450 to 486,911
_RS02225
HSERO_RS02230: HSERO_RS02230 - methyl-accepting chemotaxis protein, at 486,954 to 488,516
_RS02230
Position (kb) 486
487 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 485.588 kb on + strand, within HSERO_RS02220 at 485.598 kb on + strand, within HSERO_RS02220 at 485.620 kb on + strand, within HSERO_RS02220 at 485.620 kb on + strand, within HSERO_RS02220 at 485.620 kb on + strand, within HSERO_RS02220 at 485.628 kb on - strand, within HSERO_RS02220 at 485.628 kb on - strand, within HSERO_RS02220 at 485.831 kb on - strand, within HSERO_RS02220 at 485.962 kb on + strand at 486.038 kb on - strand, within HSERO_RS02220 at 486.043 kb on - strand, within HSERO_RS02220 at 486.099 kb on + strand, within HSERO_RS02220 at 486.291 kb on + strand at 486.342 kb on - strand at 486.641 kb on + strand, within HSERO_RS02225 at 486.649 kb on - strand, within HSERO_RS02225 at 486.727 kb on + strand, within HSERO_RS02225 at 486.734 kb on - strand, within HSERO_RS02225 at 486.780 kb on + strand, within HSERO_RS02225 at 486.825 kb on - strand, within HSERO_RS02225 at 486.970 kb on - strand at 487.010 kb on + strand at 487.285 kb on + strand, within HSERO_RS02230 at 487.291 kb on - strand, within HSERO_RS02230 at 487.291 kb on - strand, within HSERO_RS02230 at 487.426 kb on - strand, within HSERO_RS02230 at 487.682 kb on + strand, within HSERO_RS02230 at 487.704 kb on - strand, within HSERO_RS02230 at 487.860 kb on + strand, within HSERO_RS02230 at 487.872 kb on + strand, within HSERO_RS02230 at 487.880 kb on - strand, within HSERO_RS02230
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 485,588 + HSERO_RS02220 0.43 +0.3 485,598 + HSERO_RS02220 0.43 -0.1 485,620 + HSERO_RS02220 0.45 +1.0 485,620 + HSERO_RS02220 0.45 -0.8 485,620 + HSERO_RS02220 0.45 +0.1 485,628 - HSERO_RS02220 0.45 -0.6 485,628 - HSERO_RS02220 0.45 -0.9 485,831 - HSERO_RS02220 0.59 +0.5 485,962 + +1.4 486,038 - HSERO_RS02220 0.73 -0.0 486,043 - HSERO_RS02220 0.74 +0.7 486,099 + HSERO_RS02220 0.77 +1.2 486,291 + -0.6 486,342 - -0.6 486,641 + HSERO_RS02225 0.41 +0.2 486,649 - HSERO_RS02225 0.43 -3.0 486,727 + HSERO_RS02225 0.60 -1.4 486,734 - HSERO_RS02225 0.61 +0.5 486,780 + HSERO_RS02225 0.71 +1.1 486,825 - HSERO_RS02225 0.81 -0.1 486,970 - +0.6 487,010 + +2.0 487,285 + HSERO_RS02230 0.21 +1.0 487,291 - HSERO_RS02230 0.22 +0.5 487,291 - HSERO_RS02230 0.22 +1.3 487,426 - HSERO_RS02230 0.30 +0.7 487,682 + HSERO_RS02230 0.47 +1.0 487,704 - HSERO_RS02230 0.48 +1.2 487,860 + HSERO_RS02230 0.58 +0.5 487,872 + HSERO_RS02230 0.59 +1.3 487,880 - HSERO_RS02230 0.59 +0.6
Or see this region's nucleotide sequence