Experiment: RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01615 and BWI76_RS01620 are separated by 4 nucleotides BWI76_RS01620 and BWI76_RS01625 are separated by 142 nucleotides BWI76_RS01625 and BWI76_RS01630 are separated by 53 nucleotides
BWI76_RS01615: BWI76_RS01615 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase, at 327,829 to 329,418
_RS01615
BWI76_RS01620: BWI76_RS01620 - hypothetical protein, at 329,423 to 329,650
_RS01620
BWI76_RS01625: BWI76_RS01625 - hypothetical protein, at 329,793 to 329,998
_RS01625
BWI76_RS01630: BWI76_RS01630 - 16S ribosomal RNA, at 330,052 to 331,605
_RS01630
Position (kb) 329
330 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 328.543 kb on + strand, within BWI76_RS01615 at 328.608 kb on - strand, within BWI76_RS01615 at 328.639 kb on - strand, within BWI76_RS01615 at 328.689 kb on - strand, within BWI76_RS01615 at 328.739 kb on + strand, within BWI76_RS01615 at 328.775 kb on - strand, within BWI76_RS01615 at 328.858 kb on + strand, within BWI76_RS01615 at 328.896 kb on + strand, within BWI76_RS01615 at 328.999 kb on - strand, within BWI76_RS01615 at 329.130 kb on + strand, within BWI76_RS01615 at 329.218 kb on - strand, within BWI76_RS01615 at 329.306 kb on + strand at 329.312 kb on - strand at 329.368 kb on - strand at 329.428 kb on - strand at 329.594 kb on + strand, within BWI76_RS01620 at 329.594 kb on + strand, within BWI76_RS01620 at 329.600 kb on + strand, within BWI76_RS01620 at 329.605 kb on + strand, within BWI76_RS01620 at 330.515 kb on + strand, within BWI76_RS01630
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 0.5x remove 328,543 + BWI76_RS01615 0.45 -2.7 328,608 - BWI76_RS01615 0.49 -4.0 328,639 - BWI76_RS01615 0.51 -2.8 328,689 - BWI76_RS01615 0.54 -2.4 328,739 + BWI76_RS01615 0.57 -1.6 328,775 - BWI76_RS01615 0.59 -0.6 328,858 + BWI76_RS01615 0.65 -3.0 328,896 + BWI76_RS01615 0.67 -2.8 328,999 - BWI76_RS01615 0.74 -3.8 329,130 + BWI76_RS01615 0.82 -4.8 329,218 - BWI76_RS01615 0.87 -6.0 329,306 + -1.4 329,312 - -1.6 329,368 - -3.3 329,428 - -0.6 329,594 + BWI76_RS01620 0.75 +0.2 329,594 + BWI76_RS01620 0.75 -0.1 329,600 + BWI76_RS01620 0.78 +0.5 329,605 + BWI76_RS01620 0.80 +0.4 330,515 + BWI76_RS01630 0.30 -1.3
Or see this region's nucleotide sequence