Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35815

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35805 and BPHYT_RS35810 are separated by 7 nucleotidesBPHYT_RS35810 and BPHYT_RS35815 are separated by 409 nucleotidesBPHYT_RS35815 and BPHYT_RS35820 are separated by 183 nucleotidesBPHYT_RS35820 and BPHYT_RS35825 are separated by 88 nucleotides BPHYT_RS35805: BPHYT_RS35805 - DSBA oxidoreductase, at 3,621,788 to 3,623,359 _RS35805 BPHYT_RS35810: BPHYT_RS35810 - hypothetical protein, at 3,623,367 to 3,623,654 _RS35810 BPHYT_RS35815: BPHYT_RS35815 - hypothetical protein, at 3,624,064 to 3,624,273 _RS35815 BPHYT_RS35820: BPHYT_RS35820 - hypothetical protein, at 3,624,457 to 3,624,741 _RS35820 BPHYT_RS35825: BPHYT_RS35825 - hypothetical protein, at 3,624,830 to 3,625,108 _RS35825 Position (kb) 3624 3625Strain fitness (log2 ratio) -2 -1 0 1at 3623.369 kb on - strandat 3623.387 kb on + strandat 3623.824 kb on - strandat 3624.832 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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3,623,369 - +0.1
3,623,387 + +0.6
3,623,824 - +1.2
3,624,832 - -1.9

Or see this region's nucleotide sequence