Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31335

Experiment: Malonic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS31320 and BPHYT_RS31325 are separated by 37 nucleotidesBPHYT_RS31325 and BPHYT_RS31330 are separated by 60 nucleotidesBPHYT_RS31330 and BPHYT_RS31335 are separated by 20 nucleotidesBPHYT_RS31335 and BPHYT_RS31340 are separated by 509 nucleotidesBPHYT_RS31340 and BPHYT_RS31345 are separated by 14 nucleotides BPHYT_RS31320: BPHYT_RS31320 - hypothetical protein, at 2,584,257 to 2,584,631 _RS31320 BPHYT_RS31325: BPHYT_RS31325 - hypothetical protein, at 2,584,669 to 2,585,100 _RS31325 BPHYT_RS31330: BPHYT_RS31330 - MerR family transcriptional regulator, at 2,585,161 to 2,585,466 _RS31330 BPHYT_RS31335: BPHYT_RS31335 - cytochrome C biogenesis protein, at 2,585,487 to 2,586,428 _RS31335 BPHYT_RS31340: BPHYT_RS31340 - malonate transporter MadL subunit, at 2,586,938 to 2,587,333 _RS31340 BPHYT_RS31345: BPHYT_RS31345 - malonate transporter, at 2,587,348 to 2,588,115 _RS31345 Position (kb) 2585 2586 2587Strain fitness (log2 ratio) -1 0 1 2at 2585.121 kb on - strandat 2585.456 kb on + strandat 2585.872 kb on - strand, within BPHYT_RS31335at 2586.006 kb on - strand, within BPHYT_RS31335at 2586.353 kb on + strandat 2586.409 kb on + strandat 2586.429 kb on - strandat 2586.616 kb on - strandat 2587.149 kb on - strand, within BPHYT_RS31340at 2587.356 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
remove
2,585,121 - -0.1
2,585,456 + -0.5
2,585,872 - BPHYT_RS31335 0.41 +0.9
2,586,006 - BPHYT_RS31335 0.55 +0.8
2,586,353 + +1.9
2,586,409 + +0.1
2,586,429 - +1.2
2,586,616 - +0.5
2,587,149 - BPHYT_RS31340 0.53 -1.7
2,587,356 + -1.7

Or see this region's nucleotide sequence