Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS31320 and BPHYT_RS31325 are separated by 37 nucleotides BPHYT_RS31325 and BPHYT_RS31330 are separated by 60 nucleotides BPHYT_RS31330 and BPHYT_RS31335 are separated by 20 nucleotides BPHYT_RS31335 and BPHYT_RS31340 are separated by 509 nucleotides BPHYT_RS31340 and BPHYT_RS31345 are separated by 14 nucleotides
BPHYT_RS31320: BPHYT_RS31320 - hypothetical protein, at 2,584,257 to 2,584,631
_RS31320
BPHYT_RS31325: BPHYT_RS31325 - hypothetical protein, at 2,584,669 to 2,585,100
_RS31325
BPHYT_RS31330: BPHYT_RS31330 - MerR family transcriptional regulator, at 2,585,161 to 2,585,466
_RS31330
BPHYT_RS31335: BPHYT_RS31335 - cytochrome C biogenesis protein, at 2,585,487 to 2,586,428
_RS31335
BPHYT_RS31340: BPHYT_RS31340 - malonate transporter MadL subunit, at 2,586,938 to 2,587,333
_RS31340
BPHYT_RS31345: BPHYT_RS31345 - malonate transporter, at 2,587,348 to 2,588,115
_RS31345
Position (kb)
2585
2586
2587 Strain fitness (log2 ratio)
-1
0
1
2 at 2585.121 kb on - strand at 2585.456 kb on + strand at 2585.872 kb on - strand, within BPHYT_RS31335 at 2586.006 kb on - strand, within BPHYT_RS31335 at 2586.353 kb on + strand at 2586.409 kb on + strand at 2586.429 kb on - strand at 2586.616 kb on - strand at 2587.149 kb on - strand, within BPHYT_RS31340 at 2587.356 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 2,585,121 - -0.1 2,585,456 + -0.5 2,585,872 - BPHYT_RS31335 0.41 +0.9 2,586,006 - BPHYT_RS31335 0.55 +0.8 2,586,353 + +1.9 2,586,409 + +0.1 2,586,429 - +1.2 2,586,616 - +0.5 2,587,149 - BPHYT_RS31340 0.53 -1.7 2,587,356 + -1.7
Or see this region's nucleotide sequence