Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30980

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30975 and BPHYT_RS30980 are separated by 380 nucleotidesBPHYT_RS30980 and BPHYT_RS30985 are separated by 57 nucleotidesBPHYT_RS30985 and BPHYT_RS30990 overlap by 1 nucleotides BPHYT_RS30975: BPHYT_RS30975 - hypothetical protein, at 2,505,891 to 2,506,118 _RS30975 BPHYT_RS30980: BPHYT_RS30980 - AraC family transcriptional regulator, at 2,506,499 to 2,507,494 _RS30980 BPHYT_RS30985: BPHYT_RS30985 - dTDP-4-dehydrorhamnose reductase, at 2,507,552 to 2,508,454 _RS30985 BPHYT_RS30990: BPHYT_RS30990 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,508,454 to 2,509,002 _RS30990 Position (kb) 2506 2507 2508Strain fitness (log2 ratio) -1 0 1at 2505.552 kb on - strandat 2505.818 kb on + strandat 2506.426 kb on - strandat 2506.525 kb on + strandat 2507.493 kb on - strandat 2508.084 kb on + strand, within BPHYT_RS30985

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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2,505,552 - -1.2
2,505,818 + +0.3
2,506,426 - +0.1
2,506,525 + +0.1
2,507,493 - +0.4
2,508,084 + BPHYT_RS30985 0.59 -0.7

Or see this region's nucleotide sequence