Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30595

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30590 and BPHYT_RS30595 are separated by 156 nucleotidesBPHYT_RS30595 and BPHYT_RS30600 are separated by 69 nucleotides BPHYT_RS30590: BPHYT_RS30590 - transcriptional regulator, at 2,419,923 to 2,421,494 _RS30590 BPHYT_RS30595: BPHYT_RS30595 - membrane protein, at 2,421,651 to 2,422,112 _RS30595 BPHYT_RS30600: BPHYT_RS30600 - alpha/beta hydrolase, at 2,422,182 to 2,423,213 _RS30600 Position (kb) 2421 2422 2423Strain fitness (log2 ratio) -1 0 1at 2420.928 kb on + strand, within BPHYT_RS30590at 2421.107 kb on - strand, within BPHYT_RS30590at 2422.244 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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2,420,928 + BPHYT_RS30590 0.64 -1.0
2,421,107 - BPHYT_RS30590 0.75 -0.2
2,422,244 + -0.6

Or see this region's nucleotide sequence