Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS30105 and BPHYT_RS30110 overlap by 4 nucleotides BPHYT_RS30110 and BPHYT_RS30115 are separated by 97 nucleotides BPHYT_RS30115 and BPHYT_RS30120 are separated by 169 nucleotides BPHYT_RS30120 and BPHYT_RS30125 are separated by 29 nucleotides
BPHYT_RS30105: BPHYT_RS30105 - RND transporter, at 2,308,313 to 2,309,737
_RS30105
BPHYT_RS30110: BPHYT_RS30110 - hypothetical protein, at 2,309,734 to 2,310,039
_RS30110
BPHYT_RS30115: BPHYT_RS30115 - hypothetical protein, at 2,310,137 to 2,310,559
_RS30115
BPHYT_RS30120: BPHYT_RS30120 - heavy metal transporter, at 2,310,729 to 2,310,926
_RS30120
BPHYT_RS30125: BPHYT_RS30125 - hypothetical protein, at 2,310,956 to 2,311,369
_RS30125
Position (kb) 2309
2310
2311 Strain fitness (log2 ratio) -1
0
1 at 2308.974 kb on + strand, within BPHYT_RS30105 at 2308.975 kb on - strand, within BPHYT_RS30105 at 2309.076 kb on + strand, within BPHYT_RS30105 at 2310.563 kb on + strand at 2310.572 kb on + strand at 2310.573 kb on - strand at 2310.749 kb on + strand, within BPHYT_RS30120 at 2310.852 kb on - strand, within BPHYT_RS30120
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 2,308,974 + BPHYT_RS30105 0.46 +0.7 2,308,975 - BPHYT_RS30105 0.46 -0.5 2,309,076 + BPHYT_RS30105 0.54 -0.2 2,310,563 + +0.4 2,310,572 + +0.4 2,310,573 - -0.0 2,310,749 + BPHYT_RS30120 0.10 +1.5 2,310,852 - BPHYT_RS30120 0.62 +1.2
Or see this region's nucleotide sequence