Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28815

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28805 and BPHYT_RS28810 are separated by 204 nucleotidesBPHYT_RS28810 and BPHYT_RS28815 are separated by 17 nucleotidesBPHYT_RS28815 and BPHYT_RS28820 are separated by 64 nucleotides BPHYT_RS28805: BPHYT_RS28805 - glyoxalase, at 2,013,864 to 2,014,325 _RS28805 BPHYT_RS28810: BPHYT_RS28810 - MarR family transcriptional regulator, at 2,014,530 to 2,014,982 _RS28810 BPHYT_RS28815: BPHYT_RS28815 - hydrolase, at 2,015,000 to 2,015,563 _RS28815 BPHYT_RS28820: BPHYT_RS28820 - MFS transporter, at 2,015,628 to 2,016,968 _RS28820 Position (kb) 2014 2015 2016Strain fitness (log2 ratio) -1 0 1at 2014.160 kb on - strand, within BPHYT_RS28805at 2014.160 kb on - strand, within BPHYT_RS28805at 2014.448 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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2,014,160 - BPHYT_RS28805 0.64 +0.3
2,014,160 - BPHYT_RS28805 0.64 +0.6
2,014,448 + +1.1

Or see this region's nucleotide sequence