Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27965

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27960 and BPHYT_RS27965 are separated by 4 nucleotidesBPHYT_RS27965 and BPHYT_RS27970 overlap by 4 nucleotidesBPHYT_RS27970 and BPHYT_RS27975 overlap by 4 nucleotides BPHYT_RS27960: BPHYT_RS27960 - ABC transporter ATP-binding protein, at 1,838,255 to 1,839,358 _RS27960 BPHYT_RS27965: BPHYT_RS27965 - hypothetical protein, at 1,839,363 to 1,839,557 _RS27965 BPHYT_RS27970: BPHYT_RS27970 - sugar ABC transporter permease, at 1,839,554 to 1,840,507 _RS27970 BPHYT_RS27975: BPHYT_RS27975 - ABC transporter permease, at 1,840,504 to 1,841,460 _RS27975 Position (kb) 1839 1840Strain fitness (log2 ratio) -1 0 1 2at 1838.460 kb on + strand, within BPHYT_RS27960at 1838.793 kb on + strandat 1838.793 kb on + strand, within BPHYT_RS27960at 1839.619 kb on + strandat 1839.620 kb on - strandat 1839.997 kb on - strand, within BPHYT_RS27970at 1840.311 kb on + strand, within BPHYT_RS27970at 1840.312 kb on - strand, within BPHYT_RS27970at 1840.312 kb on - strand, within BPHYT_RS27970

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,838,460 + BPHYT_RS27960 0.19 -0.5
1,838,793 + +1.5
1,838,793 + BPHYT_RS27960 0.49 +2.4
1,839,619 + +0.7
1,839,620 - -0.8
1,839,997 - BPHYT_RS27970 0.46 -0.1
1,840,311 + BPHYT_RS27970 0.79 +1.8
1,840,312 - BPHYT_RS27970 0.79 +1.7
1,840,312 - BPHYT_RS27970 0.79 +0.6

Or see this region's nucleotide sequence