Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27225

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27220 and BPHYT_RS27225 are separated by 83 nucleotidesBPHYT_RS27225 and BPHYT_RS27230 are separated by 119 nucleotidesBPHYT_RS27230 and BPHYT_RS27235 are separated by 186 nucleotides BPHYT_RS27220: BPHYT_RS27220 - galactarate dehydratase, at 1,684,059 to 1,685,585 _RS27220 BPHYT_RS27225: BPHYT_RS27225 - hypothetical protein, at 1,685,669 to 1,685,902 _RS27225 BPHYT_RS27230: BPHYT_RS27230 - hypothetical protein, at 1,686,022 to 1,686,363 _RS27230 BPHYT_RS27235: BPHYT_RS27235 - hypothetical protein, at 1,686,550 to 1,686,906 _RS27235 Position (kb) 1685 1686Strain fitness (log2 ratio) -1 0 1at 1686.010 kb on + strandat 1686.011 kb on - strandat 1686.076 kb on + strand, within BPHYT_RS27230at 1686.362 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,686,010 + +0.0
1,686,011 - +0.8
1,686,076 + BPHYT_RS27230 0.16 -0.8
1,686,362 - -1.0

Or see this region's nucleotide sequence