Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27210

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27200 and BPHYT_RS27205 overlap by 4 nucleotidesBPHYT_RS27205 and BPHYT_RS27210 are separated by 13 nucleotidesBPHYT_RS27210 and BPHYT_RS27215 are separated by 27 nucleotides BPHYT_RS27200: BPHYT_RS27200 - pyridoxal 4-dehydrogenase, at 1,679,968 to 1,680,984 _RS27200 BPHYT_RS27205: BPHYT_RS27205 - amidohydrolase, at 1,680,981 to 1,681,853 _RS27205 BPHYT_RS27210: BPHYT_RS27210 - alcohol dehydrogenase, at 1,681,867 to 1,682,874 _RS27210 BPHYT_RS27215: BPHYT_RS27215 - D-mannonate oxidoreductase, at 1,682,902 to 1,684,062 _RS27215 Position (kb) 1681 1682 1683Strain fitness (log2 ratio) -2 -1 0 1at 1681.100 kb on + strand, within BPHYT_RS27205at 1681.637 kb on - strand, within BPHYT_RS27205at 1681.997 kb on - strand, within BPHYT_RS27210at 1682.108 kb on - strand, within BPHYT_RS27210at 1682.620 kb on + strand, within BPHYT_RS27210

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,681,100 + BPHYT_RS27205 0.14 +0.5
1,681,637 - BPHYT_RS27205 0.75 +0.2
1,681,997 - BPHYT_RS27210 0.13 -0.7
1,682,108 - BPHYT_RS27210 0.24 -1.8
1,682,620 + BPHYT_RS27210 0.75 +0.3

Or see this region's nucleotide sequence