Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26830

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26820 and BPHYT_RS26825 are separated by 131 nucleotidesBPHYT_RS26825 and BPHYT_RS26830 are separated by 77 nucleotidesBPHYT_RS26830 and BPHYT_RS26835 are separated by 83 nucleotides BPHYT_RS26820: BPHYT_RS26820 - LysR family transcriptional regulator, at 1,589,300 to 1,590,187 _RS26820 BPHYT_RS26825: BPHYT_RS26825 - quercetin 2,3-dioxygenase, at 1,590,319 to 1,591,044 _RS26825 BPHYT_RS26830: BPHYT_RS26830 - membrane protein, at 1,591,122 to 1,591,535 _RS26830 BPHYT_RS26835: BPHYT_RS26835 - alkane 1-monooxygenase, at 1,591,619 to 1,592,773 _RS26835 Position (kb) 1591 1592Strain fitness (log2 ratio) -2 -1 0 1 2at 1590.139 kb on + strandat 1590.254 kb on + strandat 1590.255 kb on - strandat 1590.628 kb on + strand, within BPHYT_RS26825at 1590.629 kb on - strand, within BPHYT_RS26825at 1590.815 kb on - strand, within BPHYT_RS26825at 1591.063 kb on + strandat 1591.063 kb on + strandat 1591.064 kb on - strandat 1591.130 kb on + strandat 1591.443 kb on - strand, within BPHYT_RS26830at 1591.443 kb on - strand, within BPHYT_RS26830at 1591.443 kb on - strand, within BPHYT_RS26830at 1591.443 kb on - strand, within BPHYT_RS26830at 1591.455 kb on + strand, within BPHYT_RS26830at 1591.515 kb on + strandat 1591.744 kb on - strand, within BPHYT_RS26835at 1592.004 kb on + strand, within BPHYT_RS26835at 1592.428 kb on - strand, within BPHYT_RS26835at 1592.526 kb on + strand, within BPHYT_RS26835at 1592.527 kb on - strand, within BPHYT_RS26835

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,590,139 + +0.8
1,590,254 + -0.5
1,590,255 - -0.2
1,590,628 + BPHYT_RS26825 0.43 +2.6
1,590,629 - BPHYT_RS26825 0.43 +0.4
1,590,815 - BPHYT_RS26825 0.68 +2.5
1,591,063 + -1.8
1,591,063 + +0.6
1,591,064 - -0.8
1,591,130 + +2.2
1,591,443 - BPHYT_RS26830 0.78 +0.4
1,591,443 - BPHYT_RS26830 0.78 +1.8
1,591,443 - BPHYT_RS26830 0.78 -0.3
1,591,443 - BPHYT_RS26830 0.78 +0.9
1,591,455 + BPHYT_RS26830 0.80 +0.9
1,591,515 + -0.9
1,591,744 - BPHYT_RS26835 0.11 +1.2
1,592,004 + BPHYT_RS26835 0.33 +0.4
1,592,428 - BPHYT_RS26835 0.70 +1.2
1,592,526 + BPHYT_RS26835 0.79 +0.6
1,592,527 - BPHYT_RS26835 0.79 -0.1

Or see this region's nucleotide sequence