Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25430

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25415 and BPHYT_RS25420 are separated by 154 nucleotidesBPHYT_RS25420 and BPHYT_RS25425 are separated by 16 nucleotidesBPHYT_RS25425 and BPHYT_RS25430 are separated by 18 nucleotides BPHYT_RS25415: BPHYT_RS25415 - 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 1,279,747 to 1,280,493 _RS25415 BPHYT_RS25420: BPHYT_RS25420 - hypothetical protein, at 1,280,648 to 1,280,842 _RS25420 BPHYT_RS25425: BPHYT_RS25425 - aldehyde-activating protein, at 1,280,859 to 1,281,434 _RS25425 BPHYT_RS25430: BPHYT_RS25430 - S-(hydroxymethyl)glutathione dehydrogenase, at 1,281,453 to 1,282,562 _RS25430 Position (kb) 1281 1282 1283Strain fitness (log2 ratio) -1 0 1at 1283.275 kb on - strandat 1283.303 kb on + strandat 1283.432 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,283,275 - +0.1
1,283,303 + +1.5
1,283,432 - +1.5

Or see this region's nucleotide sequence