Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25385

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25380 and BPHYT_RS25385 are separated by 15 nucleotidesBPHYT_RS25385 and BPHYT_RS25390 overlap by 4 nucleotidesBPHYT_RS25390 and BPHYT_RS25395 are separated by 36 nucleotides BPHYT_RS25380: BPHYT_RS25380 - acyl-CoA dehydrogenase, at 1,271,965 to 1,273,164 _RS25380 BPHYT_RS25385: BPHYT_RS25385 - acyl-CoA dehydrogenase, at 1,273,180 to 1,274,334 _RS25385 BPHYT_RS25390: BPHYT_RS25390 - MaoC family dehydratase, at 1,274,331 to 1,274,786 _RS25390 BPHYT_RS25395: BPHYT_RS25395 - 3-oxoacyl-ACP reductase, at 1,274,823 to 1,275,725 _RS25395 Position (kb) 1273 1274 1275Strain fitness (log2 ratio) -1 0 1at 1272.416 kb on - strand, within BPHYT_RS25380at 1275.292 kb on - strand, within BPHYT_RS25395at 1275.315 kb on + strand, within BPHYT_RS25395

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,272,416 - BPHYT_RS25380 0.38 -0.8
1,275,292 - BPHYT_RS25395 0.52 +0.8
1,275,315 + BPHYT_RS25395 0.54 +0.8

Or see this region's nucleotide sequence