Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25380

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25375 and BPHYT_RS25380 are separated by 13 nucleotidesBPHYT_RS25380 and BPHYT_RS25385 are separated by 15 nucleotides BPHYT_RS25375: BPHYT_RS25375 - lipid-transfer protein, at 1,270,770 to 1,271,951 _RS25375 BPHYT_RS25380: BPHYT_RS25380 - acyl-CoA dehydrogenase, at 1,271,965 to 1,273,164 _RS25380 BPHYT_RS25385: BPHYT_RS25385 - acyl-CoA dehydrogenase, at 1,273,180 to 1,274,334 _RS25385 Position (kb) 1271 1272 1273 1274Strain fitness (log2 ratio) -1 0 1 2at 1271.127 kb on + strand, within BPHYT_RS25375at 1271.166 kb on - strand, within BPHYT_RS25375at 1271.166 kb on - strand, within BPHYT_RS25375at 1271.342 kb on - strand, within BPHYT_RS25375at 1271.757 kb on + strand, within BPHYT_RS25375at 1271.940 kb on + strandat 1271.940 kb on + strandat 1271.941 kb on - strandat 1272.416 kb on - strand, within BPHYT_RS25380

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,271,127 + BPHYT_RS25375 0.30 +2.7
1,271,166 - BPHYT_RS25375 0.34 -0.6
1,271,166 - BPHYT_RS25375 0.34 +0.4
1,271,342 - BPHYT_RS25375 0.48 +0.1
1,271,757 + BPHYT_RS25375 0.84 -0.8
1,271,940 + -0.8
1,271,940 + -0.5
1,271,941 - -0.3
1,272,416 - BPHYT_RS25380 0.38 -0.8

Or see this region's nucleotide sequence