Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25315

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25305 and BPHYT_RS25310 are separated by 43 nucleotidesBPHYT_RS25310 and BPHYT_RS25315 are separated by 30 nucleotidesBPHYT_RS25315 and BPHYT_RS25320 are separated by 68 nucleotides BPHYT_RS25305: BPHYT_RS25305 - cobalt-containing nitrile hydratase subunit alpha, at 1,252,126 to 1,252,749 _RS25305 BPHYT_RS25310: BPHYT_RS25310 - low-molecular weight cobalt-containing nitrile hydratase subunit beta, at 1,252,793 to 1,253,536 _RS25310 BPHYT_RS25315: BPHYT_RS25315 - membrane protein, at 1,253,567 to 1,254,070 _RS25315 BPHYT_RS25320: BPHYT_RS25320 - cobalamin biosynthesis protein CobW, at 1,254,139 to 1,255,122 _RS25320 Position (kb) 1253 1254 1255Strain fitness (log2 ratio) -1 0 1 2at 1253.568 kb on + strandat 1254.051 kb on + strandat 1254.052 kb on - strandat 1254.052 kb on - strandat 1254.052 kb on - strandat 1254.867 kb on - strand, within BPHYT_RS25320at 1254.877 kb on + strand, within BPHYT_RS25320at 1254.877 kb on + strand, within BPHYT_RS25320

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,253,568 + -0.5
1,254,051 + -0.8
1,254,052 - -0.2
1,254,052 - +0.1
1,254,052 - -0.6
1,254,867 - BPHYT_RS25320 0.74 -0.1
1,254,877 + BPHYT_RS25320 0.75 +0.1
1,254,877 + BPHYT_RS25320 0.75 +2.4

Or see this region's nucleotide sequence