Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24865

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24860 and BPHYT_RS24865 are separated by 686 nucleotidesBPHYT_RS24865 and BPHYT_RS24870 are separated by 17 nucleotidesBPHYT_RS24870 and BPHYT_RS24875 are separated by 68 nucleotidesBPHYT_RS24875 and BPHYT_RS24880 are separated by 314 nucleotides BPHYT_RS24860: BPHYT_RS24860 - pilus assembly protein PilZ, at 1,147,303 to 1,148,247 _RS24860 BPHYT_RS24865: BPHYT_RS24865 - 16S ribosomal RNA, at 1,148,934 to 1,150,528 _RS24865 BPHYT_RS24870: BPHYT_RS24870 - tRNA-Ile, at 1,150,546 to 1,150,622 _RS24870 BPHYT_RS24875: BPHYT_RS24875 - tRNA-Ala, at 1,150,691 to 1,150,766 _RS24875 BPHYT_RS24880: BPHYT_RS24880 - 23S ribosomal RNA, at 1,151,081 to 1,153,983 _RS24880 Position (kb) 1148 1149 1150 1151Strain fitness (log2 ratio) -1 0 1 2 3at 1148.384 kb on + strandat 1148.385 kb on - strandat 1148.385 kb on - strandat 1148.386 kb on + strandat 1148.386 kb on + strandat 1148.386 kb on + strandat 1148.387 kb on - strandat 1148.389 kb on - strandat 1148.426 kb on + strandat 1148.464 kb on + strandat 1148.465 kb on - strandat 1148.465 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,148,384 + +1.6
1,148,385 - -0.8
1,148,385 - -0.8
1,148,386 + +0.8
1,148,386 + +2.4
1,148,386 + +2.9
1,148,387 - -1.3
1,148,389 - -1.3
1,148,426 + -0.2
1,148,464 + +0.1
1,148,465 - -0.3
1,148,465 - +0.2

Or see this region's nucleotide sequence