Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24860 and BPHYT_RS24865 are separated by 686 nucleotides BPHYT_RS24865 and BPHYT_RS24870 are separated by 17 nucleotides BPHYT_RS24870 and BPHYT_RS24875 are separated by 68 nucleotides BPHYT_RS24875 and BPHYT_RS24880 are separated by 314 nucleotides
BPHYT_RS24860: BPHYT_RS24860 - pilus assembly protein PilZ, at 1,147,303 to 1,148,247
_RS24860
BPHYT_RS24865: BPHYT_RS24865 - 16S ribosomal RNA, at 1,148,934 to 1,150,528
_RS24865
BPHYT_RS24870: BPHYT_RS24870 - tRNA-Ile, at 1,150,546 to 1,150,622
_RS24870
BPHYT_RS24875: BPHYT_RS24875 - tRNA-Ala, at 1,150,691 to 1,150,766
_RS24875
BPHYT_RS24880: BPHYT_RS24880 - 23S ribosomal RNA, at 1,151,081 to 1,153,983
_RS24880
Position (kb)
1148
1149
1150
1151 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1148.384 kb on + strand at 1148.385 kb on - strand at 1148.385 kb on - strand at 1148.386 kb on + strand at 1148.386 kb on + strand at 1148.386 kb on + strand at 1148.387 kb on - strand at 1148.389 kb on - strand at 1148.426 kb on + strand at 1148.464 kb on + strand at 1148.465 kb on - strand at 1148.465 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 1,148,384 + +1.6 1,148,385 - -0.8 1,148,385 - -0.8 1,148,386 + +0.8 1,148,386 + +2.4 1,148,386 + +2.9 1,148,387 - -1.3 1,148,389 - -1.3 1,148,426 + -0.2 1,148,464 + +0.1 1,148,465 - -0.3 1,148,465 - +0.2
Or see this region's nucleotide sequence