Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22160 and BPHYT_RS22165 are separated by 100 nucleotides BPHYT_RS22165 and BPHYT_RS22170 are separated by 47 nucleotides BPHYT_RS22170 and BPHYT_RS22175 are separated by 341 nucleotides
BPHYT_RS22160: BPHYT_RS22160 - FKBP-type peptidylprolyl isomerase, at 533,347 to 533,748
_RS22160
BPHYT_RS22165: BPHYT_RS22165 - hypothetical protein, at 533,849 to 534,310
_RS22165
BPHYT_RS22170: BPHYT_RS22170 - hypothetical protein, at 534,358 to 534,588
_RS22170
BPHYT_RS22175: BPHYT_RS22175 - hypothetical protein, at 534,930 to 536,003
_RS22175
Position (kb) 534
535 Strain fitness (log2 ratio) -1
0
1
2
3 at 533.492 kb on + strand at 533.493 kb on - strand, within BPHYT_RS22160 at 533.493 kb on - strand, within BPHYT_RS22160 at 533.840 kb on - strand at 534.190 kb on - strand, within BPHYT_RS22165 at 534.295 kb on + strand at 534.387 kb on + strand, within BPHYT_RS22170 at 534.698 kb on + strand at 534.699 kb on - strand at 534.699 kb on - strand at 534.842 kb on - strand at 534.963 kb on - strand at 535.027 kb on - strand at 535.054 kb on + strand, within BPHYT_RS22175 at 535.125 kb on - strand, within BPHYT_RS22175 at 535.314 kb on + strand, within BPHYT_RS22175 at 535.315 kb on - strand, within BPHYT_RS22175 at 535.315 kb on - strand, within BPHYT_RS22175 at 535.315 kb on - strand, within BPHYT_RS22175 at 535.323 kb on - strand, within BPHYT_RS22175 at 535.542 kb on + strand, within BPHYT_RS22175 at 535.543 kb on - strand, within BPHYT_RS22175
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 533,492 + -0.5 533,493 - BPHYT_RS22160 0.36 +0.3 533,493 - BPHYT_RS22160 0.36 -1.0 533,840 - +0.0 534,190 - BPHYT_RS22165 0.74 +1.2 534,295 + +0.9 534,387 + BPHYT_RS22170 0.13 +0.5 534,698 + +2.0 534,699 - +0.3 534,699 - +0.2 534,842 - -0.1 534,963 - +3.0 535,027 - -0.5 535,054 + BPHYT_RS22175 0.12 +0.0 535,125 - BPHYT_RS22175 0.18 +0.9 535,314 + BPHYT_RS22175 0.36 +0.2 535,315 - BPHYT_RS22175 0.36 +1.5 535,315 - BPHYT_RS22175 0.36 +1.5 535,315 - BPHYT_RS22175 0.36 +0.1 535,323 - BPHYT_RS22175 0.37 +1.3 535,542 + BPHYT_RS22175 0.57 +0.2 535,543 - BPHYT_RS22175 0.57 -0.6
Or see this region's nucleotide sequence