Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21750 and BPHYT_RS21755 are separated by 119 nucleotides BPHYT_RS21755 and BPHYT_RS21760 overlap by 1 nucleotides BPHYT_RS21760 and BPHYT_RS21765 are separated by 132 nucleotides
BPHYT_RS21750: BPHYT_RS21750 - major facilitator transporter, at 436,696 to 438,006
_RS21750
BPHYT_RS21755: BPHYT_RS21755 - twitching motility protein PilT, at 438,126 to 438,503
_RS21755
BPHYT_RS21760: BPHYT_RS21760 - antitoxin, at 438,503 to 438,733
_RS21760
BPHYT_RS21765: BPHYT_RS21765 - IclR family transcriptional regulator, at 438,866 to 439,630
_RS21765
Position (kb) 438
439 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 437.299 kb on + strand, within BPHYT_RS21750 at 437.432 kb on - strand, within BPHYT_RS21750 at 437.608 kb on + strand, within BPHYT_RS21750 at 437.609 kb on - strand, within BPHYT_RS21750 at 437.609 kb on - strand, within BPHYT_RS21750 at 437.793 kb on + strand, within BPHYT_RS21750 at 437.794 kb on - strand, within BPHYT_RS21750 at 437.812 kb on + strand, within BPHYT_RS21750 at 438.128 kb on - strand at 438.151 kb on + strand at 438.480 kb on - strand at 438.480 kb on - strand at 438.540 kb on - strand, within BPHYT_RS21760 at 438.832 kb on - strand at 438.841 kb on + strand at 439.344 kb on - strand, within BPHYT_RS21765
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 437,299 + BPHYT_RS21750 0.46 -0.3 437,432 - BPHYT_RS21750 0.56 -0.5 437,608 + BPHYT_RS21750 0.70 -0.5 437,609 - BPHYT_RS21750 0.70 +0.0 437,609 - BPHYT_RS21750 0.70 +0.8 437,793 + BPHYT_RS21750 0.84 -0.5 437,794 - BPHYT_RS21750 0.84 +1.7 437,812 + BPHYT_RS21750 0.85 -0.6 438,128 - -1.5 438,151 + -2.1 438,480 - +0.9 438,480 - +0.2 438,540 - BPHYT_RS21760 0.16 +2.9 438,832 - +1.9 438,841 + -0.1 439,344 - BPHYT_RS21765 0.62 -0.9
Or see this region's nucleotide sequence