Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20540 and BPHYT_RS20545 are separated by 87 nucleotides BPHYT_RS20545 and BPHYT_RS20550 are separated by 160 nucleotides BPHYT_RS20550 and BPHYT_RS20555 are separated by 292 nucleotides
BPHYT_RS20540: BPHYT_RS20540 - N-acetyltransferase GCN5, at 170,674 to 171,555
_RS20540
BPHYT_RS20545: BPHYT_RS20545 - hypothetical protein, at 171,643 to 171,948
_RS20545
BPHYT_RS20550: BPHYT_RS20550 - methylated-DNA-protein-cysteine methyltransferase, at 172,109 to 172,741
_RS20550
BPHYT_RS20555: BPHYT_RS20555 - serine/threonine protein kinase, at 173,034 to 174,371
_RS20555
Position (kb) 172
173 Strain fitness (log2 ratio) -1
0
1
2 at 171.112 kb on + strand, within BPHYT_RS20540 at 171.488 kb on - strand at 171.509 kb on + strand at 171.644 kb on + strand at 171.645 kb on - strand at 171.831 kb on - strand, within BPHYT_RS20545 at 171.859 kb on + strand, within BPHYT_RS20545 at 171.929 kb on - strand at 171.981 kb on + strand at 171.987 kb on + strand at 171.988 kb on - strand at 172.018 kb on - strand at 172.734 kb on + strand at 172.735 kb on - strand at 172.735 kb on - strand at 172.797 kb on + strand at 172.934 kb on + strand at 172.934 kb on + strand at 172.934 kb on + strand at 172.935 kb on - strand at 172.986 kb on + strand at 173.327 kb on - strand, within BPHYT_RS20555 at 173.575 kb on - strand, within BPHYT_RS20555 at 173.701 kb on - strand, within BPHYT_RS20555
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 171,112 + BPHYT_RS20540 0.50 -1.0 171,488 - +0.9 171,509 + +1.4 171,644 + +1.1 171,645 - +1.5 171,831 - BPHYT_RS20545 0.61 +0.7 171,859 + BPHYT_RS20545 0.71 -0.5 171,929 - +0.7 171,981 + -0.5 171,987 + +0.8 171,988 - -0.2 172,018 - -0.7 172,734 + -0.5 172,735 - -0.1 172,735 - -0.5 172,797 + +0.9 172,934 + +0.8 172,934 + +0.5 172,934 + +1.1 172,935 - +0.3 172,986 + +2.4 173,327 - BPHYT_RS20555 0.22 +0.2 173,575 - BPHYT_RS20555 0.40 +2.5 173,701 - BPHYT_RS20555 0.50 -0.1
Or see this region's nucleotide sequence