Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19420

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19415 and BPHYT_RS19420 are separated by 163 nucleotidesBPHYT_RS19420 and BPHYT_RS19425 are separated by 861 nucleotides BPHYT_RS19415: BPHYT_RS19415 - ATP synthase subunit A, at 4,367,483 to 4,368,334 _RS19415 BPHYT_RS19420: BPHYT_RS19420 - ATP synthase subunit I, at 4,368,498 to 4,369,043 _RS19420 BPHYT_RS19425: BPHYT_RS19425 - chromosome partitioning protein ParB, at 4,369,905 to 4,370,792 _RS19425 Position (kb) 4368 4369 4370Strain fitness (log2 ratio) -2 -1 0 1 2at 4369.237 kb on - strandat 4369.237 kb on - strandat 4369.306 kb on - strandat 4369.479 kb on - strandat 4369.479 kb on - strandat 4369.499 kb on + strandat 4369.500 kb on - strandat 4369.500 kb on - strandat 4369.551 kb on - strandat 4369.699 kb on - strandat 4369.789 kb on + strandat 4369.790 kb on - strandat 4369.792 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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4,369,237 - -2.5
4,369,237 - +0.7
4,369,306 - +1.2
4,369,479 - -0.5
4,369,479 - -0.8
4,369,499 + +1.2
4,369,500 - -1.1
4,369,500 - +0.4
4,369,551 - -0.3
4,369,699 - -0.4
4,369,789 + +2.2
4,369,790 - -0.1
4,369,792 + -0.4

Or see this region's nucleotide sequence