Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18215

Experiment: Malonic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS18195 and BPHYT_RS18200 are separated by 63 nucleotidesBPHYT_RS18200 and BPHYT_RS18205 are separated by 16 nucleotidesBPHYT_RS18205 and BPHYT_RS18210 are separated by 41 nucleotidesBPHYT_RS18210 and BPHYT_RS18215 are separated by 156 nucleotidesBPHYT_RS18215 and BPHYT_RS18220 are separated by 190 nucleotides BPHYT_RS18195: BPHYT_RS18195 - elongation factor Tu, at 4,094,664 to 4,095,854 _RS18195 BPHYT_RS18200: BPHYT_RS18200 - tRNA-Thr, at 4,095,918 to 4,095,992 _RS18200 BPHYT_RS18205: BPHYT_RS18205 - tRNA-Gly, at 4,096,009 to 4,096,082 _RS18205 BPHYT_RS18210: BPHYT_RS18210 - tRNA-Tyr, at 4,096,124 to 4,096,209 _RS18210 BPHYT_RS18215: BPHYT_RS18215 - 5S ribosomal RNA, at 4,096,366 to 4,096,479 _RS18215 BPHYT_RS18220: BPHYT_RS18220 - 23S ribosomal RNA, at 4,096,670 to 4,099,571 _RS18220 Position (kb) 4096 4097Strain fitness (log2 ratio) -1 0 1 2at 4096.289 kb on + strandat 4096.289 kb on + strandat 4096.292 kb on - strandat 4096.292 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
remove
4,096,289 + +2.2
4,096,289 + -0.4
4,096,292 - +1.6
4,096,292 - -0.4

Or see this region's nucleotide sequence