Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS16805 and BPHYT_RS16810 are separated by 158 nucleotides BPHYT_RS16810 and BPHYT_RS16815 are separated by 118 nucleotides BPHYT_RS16815 and BPHYT_RS16820 are separated by 13 nucleotides
BPHYT_RS16805: BPHYT_RS16805 - membrane protein SmpA, at 3,814,205 to 3,815,035
_RS16805
BPHYT_RS16810: BPHYT_RS16810 - Fur family transcriptional regulator, at 3,815,194 to 3,815,622
_RS16810
BPHYT_RS16815: BPHYT_RS16815 - ureidoglycolate hydrolase, at 3,815,741 to 3,816,253
_RS16815
BPHYT_RS16820: BPHYT_RS16820 - allantoicase, at 3,816,267 to 3,817,277
_RS16820
Position (kb) 3815
3816 Strain fitness (log2 ratio) -1
0
1 at 3815.154 kb on - strand at 3815.154 kb on - strand at 3815.154 kb on - strand at 3815.174 kb on + strand at 3815.174 kb on + strand at 3815.174 kb on + strand at 3815.174 kb on + strand at 3815.812 kb on + strand, within BPHYT_RS16815 at 3815.983 kb on - strand, within BPHYT_RS16815 at 3816.398 kb on + strand, within BPHYT_RS16820 at 3816.415 kb on - strand, within BPHYT_RS16820 at 3816.415 kb on - strand, within BPHYT_RS16820
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 3,815,154 - -0.4 3,815,154 - -0.9 3,815,154 - -0.2 3,815,174 + +0.4 3,815,174 + -0.1 3,815,174 + -1.2 3,815,174 + -0.4 3,815,812 + BPHYT_RS16815 0.14 +0.2 3,815,983 - BPHYT_RS16815 0.47 -1.3 3,816,398 + BPHYT_RS16820 0.13 -0.2 3,816,415 - BPHYT_RS16820 0.15 -1.0 3,816,415 - BPHYT_RS16820 0.15 -0.8
Or see this region's nucleotide sequence