Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16660

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS16650 and BPHYT_RS16655 are separated by 278 nucleotidesBPHYT_RS16655 and BPHYT_RS16660 are separated by 11 nucleotidesBPHYT_RS16660 and BPHYT_RS16665 are separated by 650 nucleotides BPHYT_RS16650: BPHYT_RS16650 - iron--sulfur cluster insertion protein ErpA, at 3,771,525 to 3,771,890 _RS16650 BPHYT_RS16655: BPHYT_RS16655 - 30S ribosomal protein S9, at 3,772,169 to 3,772,561 _RS16655 BPHYT_RS16660: BPHYT_RS16660 - 50S ribosomal protein L13, at 3,772,573 to 3,773,001 _RS16660 BPHYT_RS16665: BPHYT_RS16665 - peroxiredoxin, at 3,773,652 to 3,774,074 _RS16665 Position (kb) 3772 3773 3774Strain fitness (log2 ratio) -1 0 1 2at 3771.913 kb on - strandat 3771.924 kb on + strandat 3771.925 kb on - strandat 3772.018 kb on + strandat 3772.018 kb on + strandat 3772.018 kb on + strandat 3772.019 kb on - strandat 3773.192 kb on + strandat 3773.204 kb on + strandat 3773.210 kb on - strandat 3773.210 kb on - strandat 3773.228 kb on - strandat 3773.328 kb on - strandat 3773.564 kb on - strandat 3773.564 kb on - strandat 3773.609 kb on + strandat 3773.609 kb on + strandat 3773.609 kb on + strandat 3773.817 kb on + strand, within BPHYT_RS16665

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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3,771,913 - -0.2
3,771,924 + +1.9
3,771,925 - -0.2
3,772,018 + -0.1
3,772,018 + +0.1
3,772,018 + +1.4
3,772,019 - -0.1
3,773,192 + +0.5
3,773,204 + +0.6
3,773,210 - -0.5
3,773,210 - +1.1
3,773,228 - -0.2
3,773,328 - +0.4
3,773,564 - +0.1
3,773,564 - +1.5
3,773,609 + -0.6
3,773,609 + +0.9
3,773,609 + +0.7
3,773,817 + BPHYT_RS16665 0.39 +0.7

Or see this region's nucleotide sequence