Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15930

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS15925 and BPHYT_RS15930 are separated by 209 nucleotidesBPHYT_RS15930 and BPHYT_RS15935 are separated by 369 nucleotides BPHYT_RS15925: BPHYT_RS15925 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 3,615,517 to 3,616,557 _RS15925 BPHYT_RS15930: BPHYT_RS15930 - nucleotide-binding protein, at 3,616,767 to 3,617,252 _RS15930 BPHYT_RS15935: BPHYT_RS15935 - glycerol-3-phosphate acyltransferase, at 3,617,622 to 3,618,266 _RS15935 Position (kb) 3616 3617 3618Strain fitness (log2 ratio) -2 -1 0 1at 3616.564 kb on - strandat 3616.640 kb on - strandat 3616.752 kb on + strandat 3616.753 kb on - strandat 3616.977 kb on - strand, within BPHYT_RS15930at 3617.238 kb on - strandat 3617.399 kb on + strandat 3617.470 kb on + strandat 3617.472 kb on + strandat 3617.473 kb on - strandat 3617.518 kb on + strandat 3617.585 kb on + strandat 3617.585 kb on + strandat 3617.586 kb on - strandat 3617.586 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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3,616,564 - +1.3
3,616,640 - -1.8
3,616,752 + +0.5
3,616,753 - -0.2
3,616,977 - BPHYT_RS15930 0.43 -0.5
3,617,238 - +0.1
3,617,399 + -0.9
3,617,470 + -0.2
3,617,472 + -1.5
3,617,473 - -0.1
3,617,518 + +0.6
3,617,585 + +0.4
3,617,585 + +1.5
3,617,586 - +0.7
3,617,586 - -0.9

Or see this region's nucleotide sequence