Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS13720 and BPHYT_RS13725 overlap by 4 nucleotides BPHYT_RS13725 and BPHYT_RS13730 are separated by 178 nucleotides BPHYT_RS13730 and BPHYT_RS13735 are separated by 42 nucleotides
BPHYT_RS13720: BPHYT_RS13720 - O-acetylhomoserine aminocarboxypropyltransferase, at 3,127,254 to 3,128,606
_RS13720
BPHYT_RS13725: BPHYT_RS13725 - alpha/beta hydrolase, at 3,128,603 to 3,129,436
_RS13725
BPHYT_RS13730: BPHYT_RS13730 - membrane protein, at 3,129,615 to 3,129,935
_RS13730
BPHYT_RS13735: BPHYT_RS13735 - membrane protein, at 3,129,978 to 3,131,288
_RS13735
Position (kb) 3128
3129
3130 Strain fitness (log2 ratio) -1
0
1
2
3 at 3127.608 kb on + strand, within BPHYT_RS13720 at 3127.858 kb on - strand, within BPHYT_RS13720 at 3127.974 kb on + strand, within BPHYT_RS13720 at 3127.974 kb on + strand, within BPHYT_RS13720 at 3128.639 kb on + strand at 3128.639 kb on + strand at 3128.682 kb on + strand at 3128.682 kb on + strand at 3128.682 kb on + strand at 3129.465 kb on - strand at 3129.670 kb on - strand, within BPHYT_RS13730 at 3129.672 kb on + strand, within BPHYT_RS13730 at 3129.673 kb on - strand, within BPHYT_RS13730 at 3129.673 kb on - strand, within BPHYT_RS13730 at 3129.673 kb on - strand, within BPHYT_RS13730 at 3129.775 kb on + strand, within BPHYT_RS13730 at 3129.873 kb on + strand, within BPHYT_RS13730 at 3129.933 kb on + strand at 3129.964 kb on - strand at 3130.153 kb on + strand, within BPHYT_RS13735
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 3,127,608 + BPHYT_RS13720 0.26 +1.0 3,127,858 - BPHYT_RS13720 0.45 +1.3 3,127,974 + BPHYT_RS13720 0.53 +0.9 3,127,974 + BPHYT_RS13720 0.53 -0.1 3,128,639 + +1.8 3,128,639 + +1.1 3,128,682 + -0.6 3,128,682 + -0.6 3,128,682 + -0.6 3,129,465 - +1.5 3,129,670 - BPHYT_RS13730 0.17 -0.1 3,129,672 + BPHYT_RS13730 0.18 +3.5 3,129,673 - BPHYT_RS13730 0.18 +2.2 3,129,673 - BPHYT_RS13730 0.18 -1.0 3,129,673 - BPHYT_RS13730 0.18 +1.3 3,129,775 + BPHYT_RS13730 0.50 -0.2 3,129,873 + BPHYT_RS13730 0.80 +0.7 3,129,933 + +0.8 3,129,964 - +0.4 3,130,153 + BPHYT_RS13735 0.13 -0.3
Or see this region's nucleotide sequence