Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13625

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS13620 and BPHYT_RS13625 are separated by 162 nucleotidesBPHYT_RS13625 and BPHYT_RS13630 are separated by 158 nucleotidesBPHYT_RS13630 and BPHYT_RS13635 are separated by 29 nucleotidesBPHYT_RS13635 and BPHYT_RS13640 are separated by 246 nucleotides BPHYT_RS13620: BPHYT_RS13620 - phenylalanyl-tRNA synthetase subunit beta, at 3,104,243 to 3,106,678 _RS13620 BPHYT_RS13625: BPHYT_RS13625 - phenylalanine--tRNA ligase alpha subunit, at 3,106,841 to 3,107,854 _RS13625 BPHYT_RS13630: BPHYT_RS13630 - 50S ribosomal protein L20, at 3,108,013 to 3,108,372 _RS13630 BPHYT_RS13635: BPHYT_RS13635 - 50S ribosomal protein L35, at 3,108,402 to 3,108,599 _RS13635 BPHYT_RS13640: BPHYT_RS13640 - translation initiation factor IF-3, at 3,108,846 to 3,109,316 _RS13640 Position (kb) 3106 3107 3108Strain fitness (log2 ratio) -1 0 1 2at 3106.792 kb on - strandat 3106.792 kb on - strandat 3106.792 kb on - strandat 3106.799 kb on - strandat 3106.799 kb on - strandat 3106.814 kb on - strandat 3106.814 kb on - strandat 3106.814 kb on - strandat 3106.814 kb on - strandat 3108.735 kb on - strandat 3108.735 kb on - strandat 3108.735 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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3,106,792 - -0.2
3,106,792 - -0.1
3,106,792 - -0.0
3,106,799 - -0.3
3,106,799 - +0.3
3,106,814 - -1.6
3,106,814 - -0.4
3,106,814 - -0.9
3,106,814 - -0.2
3,108,735 - +0.6
3,108,735 - -0.2
3,108,735 - +2.4

Or see this region's nucleotide sequence