Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS13620 and BPHYT_RS13625 are separated by 162 nucleotides BPHYT_RS13625 and BPHYT_RS13630 are separated by 158 nucleotides BPHYT_RS13630 and BPHYT_RS13635 are separated by 29 nucleotides BPHYT_RS13635 and BPHYT_RS13640 are separated by 246 nucleotides
BPHYT_RS13620: BPHYT_RS13620 - phenylalanyl-tRNA synthetase subunit beta, at 3,104,243 to 3,106,678
_RS13620
BPHYT_RS13625: BPHYT_RS13625 - phenylalanine--tRNA ligase alpha subunit, at 3,106,841 to 3,107,854
_RS13625
BPHYT_RS13630: BPHYT_RS13630 - 50S ribosomal protein L20, at 3,108,013 to 3,108,372
_RS13630
BPHYT_RS13635: BPHYT_RS13635 - 50S ribosomal protein L35, at 3,108,402 to 3,108,599
_RS13635
BPHYT_RS13640: BPHYT_RS13640 - translation initiation factor IF-3, at 3,108,846 to 3,109,316
_RS13640
Position (kb)
3106
3107
3108 Strain fitness (log2 ratio)
-1
0
1
2 at 3106.792 kb on - strand at 3106.792 kb on - strand at 3106.792 kb on - strand at 3106.799 kb on - strand at 3106.799 kb on - strand at 3106.814 kb on - strand at 3106.814 kb on - strand at 3106.814 kb on - strand at 3106.814 kb on - strand at 3108.735 kb on - strand at 3108.735 kb on - strand at 3108.735 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 3,106,792 - -0.2 3,106,792 - -0.1 3,106,792 - -0.0 3,106,799 - -0.3 3,106,799 - +0.3 3,106,814 - -1.6 3,106,814 - -0.4 3,106,814 - -0.9 3,106,814 - -0.2 3,108,735 - +0.6 3,108,735 - -0.2 3,108,735 - +2.4
Or see this region's nucleotide sequence