Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12835

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS12830 and BPHYT_RS12835 are separated by 265 nucleotidesBPHYT_RS12835 and BPHYT_RS12840 are separated by 87 nucleotides BPHYT_RS12830: BPHYT_RS12830 - dihydrolipoamide dehydrogenase, at 2,922,827 to 2,924,629 _RS12830 BPHYT_RS12835: BPHYT_RS12835 - dihydrolipoamide acetyltransferase, at 2,924,895 to 2,926,547 _RS12835 BPHYT_RS12840: BPHYT_RS12840 - pyruvate dehydrogenase, at 2,926,635 to 2,929,331 _RS12840 Position (kb) 2924 2925 2926 2927Strain fitness (log2 ratio) -2 -1 0 1at 2924.647 kb on - strandat 2924.686 kb on - strandat 2924.686 kb on - strandat 2924.756 kb on - strandat 2924.783 kb on - strandat 2924.811 kb on - strandat 2924.814 kb on - strandat 2924.889 kb on - strandat 2924.889 kb on - strandat 2925.705 kb on - strand, within BPHYT_RS12835at 2926.637 kb on - strandat 2926.637 kb on - strandat 2927.252 kb on - strand, within BPHYT_RS12840

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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2,924,647 - -1.0
2,924,686 - +0.5
2,924,686 - +1.5
2,924,756 - -0.2
2,924,783 - +0.3
2,924,811 - -0.7
2,924,814 - +1.6
2,924,889 - -2.5
2,924,889 - +0.5
2,925,705 - BPHYT_RS12835 0.49 +0.9
2,926,637 - -0.7
2,926,637 - -0.7
2,927,252 - BPHYT_RS12840 0.23 -0.1

Or see this region's nucleotide sequence