Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10485

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10480 and BPHYT_RS10485 are separated by 163 nucleotidesBPHYT_RS10485 and BPHYT_RS10490 overlap by 8 nucleotidesBPHYT_RS10490 and BPHYT_RS10495 are separated by 323 nucleotides BPHYT_RS10480: BPHYT_RS10480 - LPS biosynthesis protein, at 2,382,876 to 2,385,161 _RS10480 BPHYT_RS10485: BPHYT_RS10485 - hypothetical protein, at 2,385,325 to 2,385,729 _RS10485 BPHYT_RS10490: BPHYT_RS10490 - hypothetical protein, at 2,385,722 to 2,385,913 _RS10490 BPHYT_RS10495: BPHYT_RS10495 - membrane protein, at 2,386,237 to 2,388,546 _RS10495 Position (kb) 2385 2386Strain fitness (log2 ratio) -1 0 1at 2384.789 kb on - strand, within BPHYT_RS10480at 2384.789 kb on - strand, within BPHYT_RS10480at 2384.899 kb on + strand, within BPHYT_RS10480at 2384.900 kb on - strand, within BPHYT_RS10480at 2385.223 kb on - strandat 2386.700 kb on - strand, within BPHYT_RS10495

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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2,384,789 - BPHYT_RS10480 0.84 +0.8
2,384,789 - BPHYT_RS10480 0.84 +0.1
2,384,899 + BPHYT_RS10480 0.88 +0.0
2,384,900 - BPHYT_RS10480 0.89 -0.0
2,385,223 - -0.8
2,386,700 - BPHYT_RS10495 0.20 -1.0

Or see this region's nucleotide sequence