Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10055

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10050 and BPHYT_RS10055 are separated by 150 nucleotidesBPHYT_RS10055 and BPHYT_RS10060 are separated by 83 nucleotides BPHYT_RS10050: BPHYT_RS10050 - oxidoreductase, at 2,288,534 to 2,289,400 _RS10050 BPHYT_RS10055: BPHYT_RS10055 - cytochrome C, at 2,289,551 to 2,290,591 _RS10055 BPHYT_RS10060: BPHYT_RS10060 - cytochrome C oxidase, at 2,290,675 to 2,292,660 _RS10060 Position (kb) 2289 2290 2291Strain fitness (log2 ratio) -1 0 1at 2289.038 kb on + strand, within BPHYT_RS10050at 2289.038 kb on + strand, within BPHYT_RS10050at 2289.041 kb on - strand, within BPHYT_RS10050at 2289.041 kb on - strand, within BPHYT_RS10050at 2289.276 kb on + strand, within BPHYT_RS10050at 2289.351 kb on - strandat 2289.469 kb on - strandat 2290.676 kb on + strandat 2290.764 kb on - strandat 2291.014 kb on + strand, within BPHYT_RS10060at 2291.015 kb on - strand, within BPHYT_RS10060

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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2,289,038 + BPHYT_RS10050 0.58 -1.5
2,289,038 + BPHYT_RS10050 0.58 +0.0
2,289,041 - BPHYT_RS10050 0.58 -0.3
2,289,041 - BPHYT_RS10050 0.58 -0.1
2,289,276 + BPHYT_RS10050 0.86 +0.3
2,289,351 - -0.1
2,289,469 - +0.4
2,290,676 + -1.0
2,290,764 - +0.6
2,291,014 + BPHYT_RS10060 0.17 +0.1
2,291,015 - BPHYT_RS10060 0.17 +0.1

Or see this region's nucleotide sequence