Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08930

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08925 and BPHYT_RS08930 are separated by 6 nucleotidesBPHYT_RS08930 and BPHYT_RS08935 are separated by 247 nucleotidesBPHYT_RS08935 and BPHYT_RS08940 are separated by 25 nucleotides BPHYT_RS08925: BPHYT_RS08925 - UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, at 2,020,010 to 2,021,062 _RS08925 BPHYT_RS08930: BPHYT_RS08930 - aminotransferase DegT, at 2,021,069 to 2,022,220 _RS08930 BPHYT_RS08935: BPHYT_RS08935 - 4-amino-4-deoxy-L-arabinose transferase, at 2,022,468 to 2,022,839 _RS08935 BPHYT_RS08940: BPHYT_RS08940 - 4-amino-4-deoxy-L-arabinose transferase, at 2,022,865 to 2,024,622 _RS08940 Position (kb) 2021 2022 2023Strain fitness (log2 ratio) -1 0 1at 2022.327 kb on + strandat 2022.327 kb on + strandat 2022.328 kb on - strandat 2022.328 kb on - strandat 2022.427 kb on - strandat 2022.430 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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2,022,327 + +0.8
2,022,327 + -0.1
2,022,328 - +1.6
2,022,328 - +0.3
2,022,427 - +1.6
2,022,430 - +0.0

Or see this region's nucleotide sequence