Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07715

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07710 and BPHYT_RS07715 are separated by 9 nucleotidesBPHYT_RS07715 and BPHYT_RS07720 are separated by 7 nucleotides BPHYT_RS07710: BPHYT_RS07710 - succinylglutamate-semialdehyde dehydrogenase, at 1,753,823 to 1,755,286 _RS07710 BPHYT_RS07715: BPHYT_RS07715 - N-succinylarginine dihydrolase, at 1,755,296 to 1,756,636 _RS07715 BPHYT_RS07720: BPHYT_RS07720 - Succinylglutamate desuccinylase (EC 3.5.1.96) (from data), at 1,756,644 to 1,757,672 _RS07720 Position (kb) 1755 1756 1757Strain fitness (log2 ratio) -1 0 1 2 3at 1755.998 kb on + strand, within BPHYT_RS07715at 1757.219 kb on + strand, within BPHYT_RS07720at 1757.220 kb on - strand, within BPHYT_RS07720at 1757.260 kb on - strand, within BPHYT_RS07720at 1757.281 kb on + strand, within BPHYT_RS07720at 1757.281 kb on + strand, within BPHYT_RS07720at 1757.281 kb on + strand, within BPHYT_RS07720at 1757.553 kb on + strand, within BPHYT_RS07720

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,755,998 + BPHYT_RS07715 0.52 -1.4
1,757,219 + BPHYT_RS07720 0.56 -0.5
1,757,220 - BPHYT_RS07720 0.56 +2.8
1,757,260 - BPHYT_RS07720 0.60 +0.2
1,757,281 + BPHYT_RS07720 0.62 +0.4
1,757,281 + BPHYT_RS07720 0.62 -0.2
1,757,281 + BPHYT_RS07720 0.62 +0.2
1,757,553 + BPHYT_RS07720 0.88 -0.2

Or see this region's nucleotide sequence