Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06635

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS06625 and BPHYT_RS06630 are separated by 63 nucleotidesBPHYT_RS06630 and BPHYT_RS06635 are separated by 21 nucleotidesBPHYT_RS06635 and BPHYT_RS06640 are separated by 9 nucleotides BPHYT_RS06625: BPHYT_RS06625 - NADH-quinone oxidoreductase subunit A, at 1,503,199 to 1,503,558 _RS06625 BPHYT_RS06630: BPHYT_RS06630 - NADH-quinone oxidoreductase subunit B, at 1,503,622 to 1,504,101 _RS06630 BPHYT_RS06635: BPHYT_RS06635 - NADH-quinone oxidoreductase subunit C, at 1,504,123 to 1,504,725 _RS06635 BPHYT_RS06640: BPHYT_RS06640 - NADH-quinone oxidoreductase subunit D, at 1,504,735 to 1,505,988 _RS06640 Position (kb) 1504 1505Strain fitness (log2 ratio) -1 0 1at 1503.156 kb on + strandat 1503.156 kb on + strandat 1503.156 kb on + strandat 1504.099 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,503,156 + -0.8
1,503,156 + +0.8
1,503,156 + +0.4
1,504,099 + -0.6

Or see this region's nucleotide sequence