Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06345 and BPHYT_RS06350 are separated by 7 nucleotides BPHYT_RS06350 and BPHYT_RS06355 overlap by 4 nucleotides BPHYT_RS06355 and BPHYT_RS06360 overlap by 4 nucleotides
BPHYT_RS06345: BPHYT_RS06345 - sensor histidine kinase, at 1,446,692 to 1,448,029
_RS06345
BPHYT_RS06350: BPHYT_RS06350 - chemotaxis protein CheY, at 1,448,037 to 1,448,441
_RS06350
BPHYT_RS06355: BPHYT_RS06355 - chemotaxis protein CheA, at 1,448,438 to 1,448,626
_RS06355
BPHYT_RS06360: BPHYT_RS06360 - chemotaxis protein CheY, at 1,448,623 to 1,449,633
_RS06360
Position (kb) 1448
1449 Strain fitness (log2 ratio) -1
0
1
2
3 at 1447.522 kb on + strand, within BPHYT_RS06345 at 1447.934 kb on + strand at 1448.074 kb on - strand at 1448.074 kb on - strand at 1448.131 kb on - strand, within BPHYT_RS06350 at 1448.271 kb on + strand, within BPHYT_RS06350 at 1448.351 kb on - strand, within BPHYT_RS06350 at 1448.698 kb on + strand at 1448.698 kb on + strand at 1448.698 kb on + strand at 1448.945 kb on + strand, within BPHYT_RS06360 at 1448.946 kb on - strand, within BPHYT_RS06360 at 1448.946 kb on - strand, within BPHYT_RS06360 at 1448.946 kb on - strand, within BPHYT_RS06360 at 1448.946 kb on - strand, within BPHYT_RS06360 at 1448.953 kb on + strand, within BPHYT_RS06360 at 1448.953 kb on + strand, within BPHYT_RS06360 at 1448.954 kb on - strand, within BPHYT_RS06360 at 1448.954 kb on - strand, within BPHYT_RS06360 at 1448.955 kb on + strand, within BPHYT_RS06360 at 1449.128 kb on + strand, within BPHYT_RS06360 at 1449.129 kb on - strand, within BPHYT_RS06360 at 1449.129 kb on - strand, within BPHYT_RS06360 at 1449.160 kb on + strand, within BPHYT_RS06360 at 1449.160 kb on + strand, within BPHYT_RS06360 at 1449.161 kb on - strand, within BPHYT_RS06360 at 1449.186 kb on + strand, within BPHYT_RS06360 at 1449.223 kb on + strand, within BPHYT_RS06360 at 1449.600 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 1,447,522 + BPHYT_RS06345 0.62 +1.4 1,447,934 + -0.1 1,448,074 - -1.6 1,448,074 - +0.4 1,448,131 - BPHYT_RS06350 0.23 -0.6 1,448,271 + BPHYT_RS06350 0.58 +0.0 1,448,351 - BPHYT_RS06350 0.78 -0.7 1,448,698 + -0.1 1,448,698 + +0.0 1,448,698 + +1.0 1,448,945 + BPHYT_RS06360 0.32 -0.1 1,448,946 - BPHYT_RS06360 0.32 -1.6 1,448,946 - BPHYT_RS06360 0.32 +0.9 1,448,946 - BPHYT_RS06360 0.32 +0.7 1,448,946 - BPHYT_RS06360 0.32 +1.3 1,448,953 + BPHYT_RS06360 0.33 -1.3 1,448,953 + BPHYT_RS06360 0.33 -0.8 1,448,954 - BPHYT_RS06360 0.33 +1.3 1,448,954 - BPHYT_RS06360 0.33 +3.2 1,448,955 + BPHYT_RS06360 0.33 -1.3 1,449,128 + BPHYT_RS06360 0.50 -0.6 1,449,129 - BPHYT_RS06360 0.50 -0.0 1,449,129 - BPHYT_RS06360 0.50 -0.6 1,449,160 + BPHYT_RS06360 0.53 +2.0 1,449,160 + BPHYT_RS06360 0.53 +0.7 1,449,161 - BPHYT_RS06360 0.53 +0.6 1,449,186 + BPHYT_RS06360 0.56 +0.4 1,449,223 + BPHYT_RS06360 0.59 -0.0 1,449,600 + +0.6
Or see this region's nucleotide sequence