Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06005 and BPHYT_RS06010 overlap by 1 nucleotides BPHYT_RS06010 and BPHYT_RS06015 overlap by 4 nucleotides BPHYT_RS06015 and BPHYT_RS06020 are separated by 116 nucleotides BPHYT_RS06020 and BPHYT_RS06025 are separated by 66 nucleotides BPHYT_RS06025 and BPHYT_RS06030 overlap by 1 nucleotides
BPHYT_RS06005: BPHYT_RS06005 - chorismate--pyruvate lyase, at 1,368,005 to 1,368,688
_RS06005
BPHYT_RS06010: BPHYT_RS06010 - 2-hydroxyacid dehydrogenase, at 1,368,688 to 1,369,161
_RS06010
BPHYT_RS06015: BPHYT_RS06015 - spermidine synthase, at 1,369,158 to 1,370,090
_RS06015
BPHYT_RS06020: BPHYT_RS06020 - hypothetical protein, at 1,370,207 to 1,370,443
_RS06020
BPHYT_RS06025: BPHYT_RS06025 - hypothetical protein, at 1,370,510 to 1,370,755
_RS06025
BPHYT_RS06030: BPHYT_RS06030 - sodium:solute symporter, at 1,370,755 to 1,372,305
_RS06030
Position (kb) 1369
1370
1371 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1368.275 kb on - strand, within BPHYT_RS06005 at 1368.275 kb on - strand, within BPHYT_RS06005 at 1368.357 kb on - strand, within BPHYT_RS06005 at 1368.357 kb on - strand, within BPHYT_RS06005 at 1368.358 kb on + strand, within BPHYT_RS06005 at 1368.364 kb on + strand, within BPHYT_RS06005 at 1368.729 kb on + strand at 1368.781 kb on + strand, within BPHYT_RS06010 at 1368.782 kb on - strand, within BPHYT_RS06010 at 1368.782 kb on - strand, within BPHYT_RS06010 at 1368.784 kb on + strand, within BPHYT_RS06010 at 1368.784 kb on + strand, within BPHYT_RS06010 at 1368.785 kb on - strand, within BPHYT_RS06010 at 1369.083 kb on - strand, within BPHYT_RS06010 at 1369.110 kb on + strand, within BPHYT_RS06010 at 1369.110 kb on + strand, within BPHYT_RS06010 at 1369.110 kb on + strand, within BPHYT_RS06010 at 1369.110 kb on + strand, within BPHYT_RS06010 at 1369.111 kb on - strand, within BPHYT_RS06010 at 1369.111 kb on - strand, within BPHYT_RS06010 at 1369.111 kb on - strand, within BPHYT_RS06010 at 1369.155 kb on + strand at 1369.155 kb on + strand at 1369.155 kb on + strand at 1369.155 kb on + strand at 1369.155 kb on + strand at 1369.156 kb on - strand at 1369.156 kb on - strand at 1369.156 kb on - strand at 1369.247 kb on + strand at 1369.248 kb on - strand at 1369.484 kb on + strand, within BPHYT_RS06015 at 1369.735 kb on - strand, within BPHYT_RS06015 at 1370.030 kb on + strand at 1370.407 kb on + strand, within BPHYT_RS06020 at 1370.408 kb on - strand, within BPHYT_RS06020 at 1370.410 kb on - strand, within BPHYT_RS06020 at 1370.489 kb on + strand at 1370.492 kb on + strand at 1370.493 kb on - strand at 1370.600 kb on + strand, within BPHYT_RS06025 at 1370.601 kb on - strand, within BPHYT_RS06025 at 1370.697 kb on - strand, within BPHYT_RS06025 at 1370.766 kb on - strand at 1370.817 kb on + strand at 1370.927 kb on - strand, within BPHYT_RS06030 at 1370.936 kb on - strand, within BPHYT_RS06030 at 1371.001 kb on + strand, within BPHYT_RS06030 at 1371.016 kb on + strand, within BPHYT_RS06030 at 1371.016 kb on + strand, within BPHYT_RS06030 at 1371.017 kb on - strand, within BPHYT_RS06030 at 1371.017 kb on - strand, within BPHYT_RS06030 at 1371.074 kb on - strand, within BPHYT_RS06030 at 1371.074 kb on - strand, within BPHYT_RS06030 at 1371.074 kb on - strand, within BPHYT_RS06030
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 1,368,275 - BPHYT_RS06005 0.39 +0.8 1,368,275 - BPHYT_RS06005 0.39 -1.4 1,368,357 - BPHYT_RS06005 0.51 +0.3 1,368,357 - BPHYT_RS06005 0.51 -0.6 1,368,358 + BPHYT_RS06005 0.52 -0.3 1,368,364 + BPHYT_RS06005 0.52 +0.0 1,368,729 + +1.0 1,368,781 + BPHYT_RS06010 0.20 +0.6 1,368,782 - BPHYT_RS06010 0.20 +0.3 1,368,782 - BPHYT_RS06010 0.20 +0.4 1,368,784 + BPHYT_RS06010 0.20 +0.5 1,368,784 + BPHYT_RS06010 0.20 -1.2 1,368,785 - BPHYT_RS06010 0.20 -0.2 1,369,083 - BPHYT_RS06010 0.83 +0.9 1,369,110 + BPHYT_RS06010 0.89 +2.0 1,369,110 + BPHYT_RS06010 0.89 +1.1 1,369,110 + BPHYT_RS06010 0.89 -0.2 1,369,110 + BPHYT_RS06010 0.89 +0.8 1,369,111 - BPHYT_RS06010 0.89 +0.4 1,369,111 - BPHYT_RS06010 0.89 +0.4 1,369,111 - BPHYT_RS06010 0.89 -2.4 1,369,155 + +0.3 1,369,155 + -0.3 1,369,155 + +0.4 1,369,155 + -0.9 1,369,155 + +1.1 1,369,156 - +0.9 1,369,156 - -0.6 1,369,156 - +1.4 1,369,247 + -0.6 1,369,248 - +1.4 1,369,484 + BPHYT_RS06015 0.35 -2.2 1,369,735 - BPHYT_RS06015 0.62 -1.6 1,370,030 + +0.2 1,370,407 + BPHYT_RS06020 0.84 +0.0 1,370,408 - BPHYT_RS06020 0.85 +1.9 1,370,410 - BPHYT_RS06020 0.86 -0.0 1,370,489 + +0.2 1,370,492 + +0.7 1,370,493 - -0.2 1,370,600 + BPHYT_RS06025 0.37 -1.2 1,370,601 - BPHYT_RS06025 0.37 -0.9 1,370,697 - BPHYT_RS06025 0.76 -0.6 1,370,766 - +0.7 1,370,817 + +0.1 1,370,927 - BPHYT_RS06030 0.11 +0.4 1,370,936 - BPHYT_RS06030 0.12 -1.6 1,371,001 + BPHYT_RS06030 0.16 +0.3 1,371,016 + BPHYT_RS06030 0.17 +0.4 1,371,016 + BPHYT_RS06030 0.17 +1.6 1,371,017 - BPHYT_RS06030 0.17 +0.7 1,371,017 - BPHYT_RS06030 0.17 -0.0 1,371,074 - BPHYT_RS06030 0.21 -0.5 1,371,074 - BPHYT_RS06030 0.21 -0.3 1,371,074 - BPHYT_RS06030 0.21 +0.5
Or see this region's nucleotide sequence