Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03700

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03695 and BPHYT_RS03700 are separated by 140 nucleotidesBPHYT_RS03700 and BPHYT_RS03705 overlap by 4 nucleotidesBPHYT_RS03705 and BPHYT_RS03710 are separated by 10 nucleotides BPHYT_RS03695: BPHYT_RS03695 - protein TolB, at 839,702 to 840,994 _RS03695 BPHYT_RS03700: BPHYT_RS03700 - cell envelope biogenesis protein TonB, at 841,135 to 842,169 _RS03700 BPHYT_RS03705: BPHYT_RS03705 - biopolymer transporter ExbD, at 842,166 to 842,612 _RS03705 BPHYT_RS03710: BPHYT_RS03710 - protein tolQ, at 842,623 to 843,300 _RS03710 Position (kb) 841 842 843Strain fitness (log2 ratio) -1 0 1 2 3at 841.062 kb on - strandat 841.126 kb on + strandat 841.126 kb on + strandat 841.127 kb on - strandat 842.148 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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841,062 - +1.2
841,126 + +0.6
841,126 + -1.3
841,127 - +3.0
842,148 - +0.0

Or see this region's nucleotide sequence